YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|254235598, gi...
Organism:	Pseudomonas aeruginosa C3719
Length:	426 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|254235598, gi....

Description	E-value	Query Range	Subject Range
SYS_PSEA7 - Serine--tRNA ligase OS=Pseudomonas aeruginosa (strain PA7) GN=serS PE=3 SV=1	0.0	[1..426]	[1..426]
gi\|67155739\|ref\|... - Seryl-tRNA synthetase, class IIa [Azotobacter vinelandii AvOP] gi\|67155739, gi\|... - gi\|67155739\|ref\|ZP_00417366.1\| Seryl-tRNA synthetase, class IIa [Azotobacter vinelandii AvOP], gi\|67...	0.0	[1..426]	[182..607]
SYS_SHIB3 - Serine--tRNA ligase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=serS PE=3 SV=1	0.0	[1..426]	[1..430]
SYS_ECO7I - Serine--tRNA ligase OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=serS PE=3 SV=1 SYS_ECOLU - Serine--tRNA ligase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=serS PE=3 SV=1 SYS_ECO5E - Serine--tRNA ligase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=serS PE=3 SV=1 SYS_ECOSE - Serine--tRNA ligase OS=Escherichia coli (strain SE11) GN=serS PE=3 SV=1 SYS_ECO27 - Serine--tRNA ligase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=serS PE=3 SV=1 gi\|217326397, gi... - gi\|217326397\|ref\|ZP_03442481.1\| seryl-tRNA synthetase [Escherichia coli O157:H7 str. TW14588], gi\|21... SYS_ECO8A - Serine--tRNA ligase OS=Escherichia coli O8 (strain IAI1) GN=serS PE=3 SV=1 SYS_ECO45 - Serine--tRNA ligase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=serS PE=3 SV=1 SYS_ECO81 - Serine--tRNA ligase OS=Escherichia coli O81 (strain ED1a) GN=serS PE=3 SV=1 SYS_ECO55 - Serine--tRNA ligase OS=Escherichia coli (strain 55989 / EAEC) GN=serS PE=3 SV=1 sp\|B7UMY4\|SYS_ECO27 - Seryl-tRNA synthetase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=serS PE=3 SV=1 SYS_SHISS - Serine--tRNA ligase OS=Shigella sonnei (strain Ss046) GN=serS PE=3 SV=1 SYS_SHIBS - Serine--tRNA ligase OS=Shigella boydii serotype 4 (strain Sb227) GN=serS PE=3 SV=1 gi\|75257392, gi\|... - gi\|75257392\|ref\|ZP_00728908.1\| COG0172: Seryl-tRNA synthetase [Escherichia coli E22], gi\|193064674\|r... gi\|188492608, gi... - gi\|75512046\|ref\|ZP_00734631.1\| COG0172: Seryl-tRNA synthetase [Escherichia coli 53638], gi\|188492608... gi\|194438706, gi... - gi\|83585836\|ref\|ZP_00924476.1\| COG0172: Seryl-tRNA synthetase [Escherichia coli 101-1], gi\|194438706... gi\|13360437, gi\|... - gi\|15830232\|ref\|NP_309005.1\| seryl-tRNA synthetase [Escherichia coli O157:H7 str. Sakai], gi\|1336043... gi\|189372720, gi... - gi\|189372720\|gb\|EDU91136.1\| seryl-tRNA synthetase [Escherichia coli O157:H7 str. EC869], gi\|16878732... SYS_ECO24 - Serine--tRNA ligase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=serS PE=3 SV=1 SYS_ECOL5 - Serine--tRNA ligase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=serS PE=3 SV=1 gi\|189376450, gi... - gi\|189376450\|gb\|EDU94866.1\| seryl-tRNA synthetase [Escherichia coli O157:H7 str. EC508], gi\|16880142... SYS_SHIF8 - Serine--tRNA ligase OS=Shigella flexneri serotype 5b (strain 8401) GN=serS PE=3 SV=1 SYS_ECODH - Serine--tRNA ligase OS=Escherichia coli (strain K12 / DH10B) GN=serS PE=3 SV=1 SYS_ECOSM - Serine--tRNA ligase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=serS PE=3 SV=1 gi\|191167614, gi... - gi\|75229261\|ref\|ZP_00715826.1\| COG0172: Seryl-tRNA synthetase [Escherichia coli B7A], gi\|191167614\|r... gi\|195939556 - gi\|195939556\|ref\|ZP_03084938.1\| seryl-tRNA synthetase [Escherichia coli O157:H7 str. EC4024] gi\|75240970, gi\|... - gi\|75240970\|ref\|ZP_00724859.1\| COG0172: Seryl-tRNA synthetase [Escherichia coli F11], gi\|191172133\|r... gi\|208808989, gi... - gi\|208808989\|ref\|ZP_03251326.1\| seryl-tRNA synthetase [Escherichia coli O157:H7 str. EC4206], gi\|208... SYS_ECOHS - Serine--tRNA ligase OS=Escherichia coli O9:H4 (strain HS) GN=serS PE=3 SV=1 gi\|89107743, gi\|... - gi\|89107743\|ref\|AP_001523.1\| seryl-tRNA synthetase, also charges selenocysteinyl-tRNA with serine [E... gi\|208732184, gi... - gi\|208815536\|ref\|ZP_03256715.1\| seryl-tRNA synthetase [Escherichia coli O157:H7 str. EC4045], gi\|208... gi\|194413610, gi... - gi\|75210418\|ref\|ZP_00710574.1\| COG0172: Seryl-tRNA synthetase [Escherichia coli B171], gi\|194428395\|... SYS_ECOUT - Serine--tRNA ligase OS=Escherichia coli (strain UTI89 / UPEC) GN=serS PE=3 SV=1 gi\|208822033, gi... - gi\|208822033\|ref\|ZP_03262352.1\| seryl-tRNA synthetase [Escherichia coli O157:H7 str. EC4042], gi\|208... gi\|168752125, gi... - gi\|188013954\|gb\|EDU52076.1\| seryl-tRNA synthetase [Escherichia coli O157:H7 str. EC4113], gi\|1687521... gi\|189355936, gi... - gi\|189355936\|gb\|EDU74355.1\| seryl-tRNA synthetase [Escherichia coli O157:H7 str. EC4401], gi\|1687569... gi\|168762973, gi... - gi\|189366796\|gb\|EDU85212.1\| seryl-tRNA synthetase [Escherichia coli O157:H7 str. EC4501], gi\|1687629... gi\|189361156, gi... - gi\|189361156\|gb\|EDU79575.1\| seryl-tRNA synthetase [Escherichia coli O157:H7 str. EC4486], gi\|1687698... gi\|168776256, gi... - gi\|187768390\|gb\|EDU32234.1\| seryl-tRNA synthetase [Escherichia coli O157:H7 str. EC4196], gi\|1687762... EG10947 - seryl-tRNA synthetase / Serine--tRNA ligase; serine hydroxamate resistance gi\|168783803, gi... - gi\|188998912\|gb\|EDU67898.1\| seryl-tRNA synthetase [Escherichia coli O157:H7 str. EC4076], gi\|1687838... SYS_ECOLI - Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase) (SerRS) - Escherichia coli SYS_ECOL6 - Serine--tRNA ligase OS=Escherichia coli O6 GN=serS PE=3 SV=1 SYS_SHIFL - Serine--tRNA ligase OS=Shigella flexneri GN=serS PE=3 SV=1 gi\|24112268, gi\|... - gi\|24112268\|ref\|NP_706778.1\| seryl-tRNA synthetase [Shigella flexneri 2a str. 301], gi\|24051120\|gb\|A... gi\|254591493, gi... - gi\|254792093\|ref\|YP_003076930.1\| seryl-tRNA synthetase, also charges selenocysteinyl-tRNA with serin... SYS_ECOL6 - Serine--tRNA ligase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=serS PE=3 SV=1 gi\|254161007, gi... - gi\|254161007\|ref\|YP_003044115.1\| seryl-tRNA synthetase [Escherichia coli B str. REL606], gi\|25397290... gi\|30040626, gi\|... - gi\|30062380\|ref\|NP_836551.1\| seryl-tRNA synthetase [Shigella flexneri 2a str. 2457T], gi\|30040626\|gb... gi\|253325122, gi... - gi\|254287815\|ref\|YP_003053563.1\| seryl-tRNA synthetase [Escherichia coli BL21(DE3)], gi\|253977122\|gb... SYS_ECO57 - Serine--tRNA ligase OS=Escherichia coli O157:H7 GN=serS PE=3 SV=1 gi\|242376708, gi... - gi\|251784435\|ref\|YP_002998739.1\| hypothetical protein B21_00904 [Escherichia coli BL21], gi\|24237670... EG10947 - seryl-tRNA synthetase / Serine--tRNA ligase; serine hydroxamate resistance SYS_ECOBW - Serine--tRNA ligase OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=serS PE=3 SV=1 gi\|226898327, gi... - gi\|237707117\|ref\|ZP_04537598.1\| seryl-tRNA synthetase [Escherichia sp. 3_2_53FAA], gi\|226898327\|gb\|E... gi\|227838892, gi... - gi\|227884140\|ref\|ZP_04001945.1\| seryl-tRNA synthetase [Escherichia coli 83972], gi\|227838892\|gb\|EEJ4... SYS_ECOLC - Serine--tRNA ligase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=serS PE=3 SV=1 SYS_ECOK1 - Serine--tRNA ligase OS=Escherichia coli O1:K1 / APEC GN=serS PE=3 SV=1 gi\|124531982, gi... - gi\|124531982\|ref\|ZP_01702041.1\| seryl-tRNA synthetase [Escherichia coli B], gi\|124498244\|gb\|EAY45765...	0.0	[1..426]	[1..430]
gi\|25293153 - pir\|\|H85614 hypothetical protein serS [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|12514055, gi\|... - gi\|15800756\|ref\|NP_286770.1\| seryl-tRNA synthetase [Escherichia coli O157:H7 EDL933], gi\|12514055\|gb...	0.0	[1..426]	[1..430]
SYS_SHIDS - Serine--tRNA ligase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=serS PE=3 SV=1	0.0	[1..426]	[1..430]
gi\|193070743, gi... - gi\|75234424\|ref\|ZP_00718785.1\| COG0172: Seryl-tRNA synthetase [Escherichia coli E110019], gi\|1930707...	0.0	[1..426]	[1..430]
gi\|167550365, gi... - gi\|205324587\|gb\|EDZ12426.1\| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Saint... gi\|205327478, gi... - gi\|205327478\|gb\|EDZ14242.1\| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar 4,[5]... gi\|238913262 - gi\|238913262\|ref\|ZP_04657099.1\| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar T... lcl\|NC_016856.1_... - [gene=serS] [protein=seryl-tRNA synthetase] [protein_id=YP_005236678.1] [location=1002151..1003443] SYS_SALPB - Serine--tRNA ligase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=serS PE=3 SV=1 SYS_SALEP - Serine--tRNA ligase OS=Salmonella enteritidis PT4 (strain P125109) GN=serS PE=3 SV=1 SYS_SALTI - Serine--tRNA ligase OS=Salmonella typhi GN=serS PE=3 SV=1 gi\|213428591 - gi\|213428591\|ref\|ZP_03361341.1\| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar T... SYS_SALCH - Serine--tRNA ligase OS=Salmonella choleraesuis GN=serS PE=3 SV=1 gi\|213580909 - gi\|213580909\|ref\|ZP_03362735.1\| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar T... gi\|213609744 - gi\|213609744\|ref\|ZP_03369570.1\| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar T... gi\|16759834 - gi\|16759834\|ref\|NP_455451.1\| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Typh... SYS_SALPK - Serine--tRNA ligase OS=Salmonella paratyphi A (strain AKU_12601) GN=serS PE=3 SV=1 SYS_SALDC - Serine--tRNA ligase OS=Salmonella dublin (strain CT_02021853) GN=serS PE=3 SV=1 SYS_SALTY - Serine--tRNA ligase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=serS PE=3 SV=... gi\|200390080, gi... - gi\|200390080\|ref\|ZP_03216691.1\| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar V... gi\|29138023, gi\|... - gi\|29142393\|ref\|NP_805735.1\| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Typh... SYS_SALG2 - Serine--tRNA ligase OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=serS PE=3 SV=1 SYS_SALCH - Serine--tRNA ligase OS=Salmonella choleraesuis (strain SC-B67) GN=serS PE=3 SV=1 SYS_SALNS - Serine--tRNA ligase OS=Salmonella newport (strain SL254) GN=serS PE=3 SV=1 SYS_SALPA - Serine--tRNA ligase OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=serS PE=3 SV=1 gi\|194457722, gi... - gi\|194471358\|ref\|ZP_03077342.1\| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar K... SYS_SALA4 - Serine--tRNA ligase OS=Salmonella agona (strain SL483) GN=serS PE=3 SV=1 SYS_SALTY - Serine--tRNA ligase OS=Salmonella typhimurium GN=serS PE=3 SV=1 gi\|197241068, gi... - gi\|197262813\|ref\|ZP_03162887.1\| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar S... gi\|168230857, gi... - gi\|205334663\|gb\|EDZ21427.1\| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Kentu... gi\|205347703, gi... - gi\|205347703\|gb\|EDZ34334.1\| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Hadar... gi\|168466548, gi... - gi\|195631016\|gb\|EDX49602.1\| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Newpo... gi\|205340753, gi... - gi\|205340753\|gb\|EDZ27517.1\| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Welte... gi\|213851472 - gi\|213851472\|ref\|ZP_03381370.1\| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar T... gi\|214003461 - gi\|214003461\|ref\|ZP_03414196.1\| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar T... SYS_SALTI - Seryl-tRNA synthetase OS=Salmonella typhi GN=serS PE=3 SV=1 SYS_SALTY - Seryl-tRNA synthetase OS=Salmonella typhimurium GN=serS PE=3 SV=1 SYS_SALPA - Serine--tRNA ligase OS=Salmonella paratyphi A GN=serS PE=3 SV=1 SYS_SALPB - Seryl-tRNA synthetase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=serS PE=3 SV=1 SYS_SALCH - Seryl-tRNA synthetase OS=Salmonella choleraesuis GN=serS PE=3 SV=1	0.0	[1..426]	[1..430]
SYS_PSEPF - Serine--tRNA ligase OS=Pseudomonas fluorescens (strain Pf0-1) GN=serS PE=3 SV=1	0.0	[1..426]	[1..426]
SYS_PSEPK - Serine--tRNA ligase OS=Pseudomonas putida (strain KT2440) GN=serS PE=3 SV=1	0.0	[1..425]	[1..425]

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Predicted Domain #1

Region A:
Residues: [1-426]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLDPKLVRTQ PQEVAARLAT RGFQLDVARI EALEEQRKSV QTRTEQLQAE RNARSKAIGQ  60
   61 AKQRGEDIAP LLADVDRMGS ELEEGKRQLD AIQGELDAML LGIPNLPHES VPVGADEDAN 120
  121 VEVRRWGTPK TFDFEVKDHV ALGERHGWLD FETAAKLSGA RFALMRGPIA RLHRALAQFM 180
  181 INLHTAEHGY EEAYTPYLVQ APALQGTGQL PKFEEDLFKI GRDGEADLYL IPTAEVSLTN 240
  241 IVSGQILDAK QLPLKFVAHT PCFRSEAGAS GRDTRGMIRQ HQFDKVEMVQ IVDPATSYEA 300
  301 LEGLTANAER VLQLLELPYR VLALCTGDMG FGATKTYDLE VWVPSQDKYR EISSCSNCGD 360
  361 FQARRMQARY RNPETGKPEL VHTLNGSGLA VGRTLVAVLE NYQQADGSIR VPEVLKPYMA 420
  421 GIEVIG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	117.0
Match:	2dq3A
Description:	No description for 2dq3A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits