YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|85676216, gi\|...
Organism:	Escherichia coli str. K-12 substr. W3110
Length:	546 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|85676216, gi|....

Description	E-value	Query Range	Subject Range
UBIB_ECOL5 - Probable protein kinase UbiB OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=ubiB PE=3 SV=1 UBIB_ECOUT - Probable protein kinase UbiB OS=Escherichia coli (strain UTI89 / UPEC) GN=ubiB PE=3 SV=1 gi\|75237630, gi\|... - gi\|75237630\|ref\|ZP_00721650.1\| COG0661: Predicted unusual protein kinase [Escherichia coli F11], gi\|... UBIB_ECOK1 - Probable protein kinase UbiB OS=Escherichia coli O1:K1 / APEC GN=ubiB PE=3 SV=1 UBIB_ECO81 - Probable protein kinase UbiB OS=Escherichia coli O81 (strain ED1a) GN=ubiB PE=3 SV=1 UBIB_ECO45 - Probable protein kinase UbiB OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=ubiB PE=3 SV=1 gi\|227888551, gi... - gi\|227888551\|ref\|ZP_04006356.1\| ubiquinone biosynthesis protein UbiB [Escherichia coli 83972], gi\|22... gi\|237702870, gi... - gi\|237702870\|ref\|ZP_04533351.1\| 2-octaprenylphenol hydroxylase [Escherichia sp. 3_2_53FAA], gi\|22690... UBIB_ECOL6 - Probable protein kinase UbiB OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=ubiB ... UBIB_ECOL6 - Probable ubiquinone biosynthesis protein UbiB OS=Escherichia coli O6 GN=ubiB PE=3 SV=1	441.0	[0..1]	[546..1]
gi\|194417706, gi... - gi\|83569329\|ref\|ZP_00920784.1\| COG0661: Predicted unusual protein kinase [Shigella dysenteriae 1012]...	441.0	[0..1]	[546..1]
UBIB_SHISS - Probable protein kinase UbiB OS=Shigella sonnei (strain Ss046) GN=ubiB PE=3 SV=1	439.0	[0..1]	[546..1]
gi\|151938911, gi... - gi\|75856472\|ref\|ZP_00764100.1\| COG0661: Predicted unusual protein kinase [Vibrio sp. Ex25], gi\|25422...	419.0	[0..1]	[546..1]
UBIB_SALCH - Probable ubiquinone biosynthesis protein ubiB OS=Salmonella choleraesuis GN=ubiB PE=3 SV=1 UBIB_SALSV - Probable protein kinase UbiB OS=Salmonella schwarzengrund (strain CVM19633) GN=ubiB PE=3 SV=1 UBIB_SALCH - Probable ubiquinone biosynthesis protein UbiB OS=Salmonella choleraesuis GN=ubiB PE=3 SV=1 gi\|194455471, gi... - gi\|194469107\|ref\|ZP_03075091.1\| 2-polyprenylphenol 6-hydroxylase [Salmonella enterica subsp. enteric... gi\|197262531, gi... - gi\|197262531\|ref\|ZP_03162605.1\| 2-polyprenylphenol 6-hydroxylase [Salmonella enterica subsp. enteric... UBIB_SALA4 - Probable protein kinase UbiB OS=Salmonella agona (strain SL483) GN=ubiB PE=3 SV=1 gi\|205340979, gi... - gi\|205340979\|gb\|EDZ27743.1\| 2-polyprenylphenol 6-hydroxylase [Salmonella enterica subsp. enterica se... gi\|168467611, gi... - gi\|195629950\|gb\|EDX48610.1\| 2-polyprenylphenol 6-hydroxylase [Salmonella enterica subsp. enterica se... UBIB_SALHS - Probable protein kinase UbiB OS=Salmonella heidelberg (strain SL476) GN=ubiB PE=3 SV=1 UBIB_SALNS - Probable protein kinase UbiB OS=Salmonella newport (strain SL254) GN=ubiB PE=3 SV=1 gi\|168238425, gi... - gi\|197288734\|gb\|EDY28109.1\| 2-polyprenylphenol 6-hydroxylase [Salmonella enterica subsp. enterica se... gi\|205332074, gi... - gi\|205332074\|gb\|EDZ18838.1\| 2-polyprenylphenol 6-hydroxylase [Salmonella enterica subsp. enterica se... gi\|205348229, gi... - gi\|205348229\|gb\|EDZ34860.1\| 2-polyprenylphenol 6-hydroxylase [Salmonella enterica subsp. enterica se... gi\|205336524, gi... - gi\|205336524\|gb\|EDZ23288.1\| 2-polyprenylphenol 6-hydroxylase [Salmonella enterica subsp. enterica se... UBIB_SALPB - Probable protein kinase UbiB OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=ubiB PE=3 SV... UBIB_SALTI - Probable ubiquinone biosynthesis protein ubiB OS=Salmonella typhi GN=ubiB PE=3 SV=1 UBIB_SALTI - Probable protein kinase UbiB OS=Salmonella typhi GN=ubiB PE=3 SV=1 UBIB_SALPB - Probable ubiquinone biosynthesis protein ubiB OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7... gi\|167993912, gi... - gi\|205328166\|gb\|EDZ14930.1\| 2-polyprenylphenol 6-hydroxylase [Salmonella enterica subsp. enterica se... UBIB_SALPA - Probable ubiquinone biosynthesis protein UbiB OS=Salmonella paratyphi A GN=ubiB PE=3 SV=1 UBIB_SALTY - Probable ubiquinone biosynthesis protein ubiB OS=Salmonella typhimurium GN=ubiB PE=3 SV=1 gi\|214002445 - gi\|214002445\|ref\|ZP_03413180.1\| putative ubiquinone biosynthesis protein UbiB [Salmonella enterica s... gi\|213427340 - gi\|213427340\|ref\|ZP_03360090.1\| putative ubiquinone biosynthesis protein UbiB [Salmonella enterica s... UBIB_SALPC - Probable protein kinase UbiB OS=Salmonella paratyphi C (strain RKS4594) GN=ubiB PE=3 SV=1 lcl\|NC_016856.1_... - [gene=ubiB] [protein=putative ubiquinone biosynthesis protein UbiB] [protein_id=YP_005240237.1] [loc... UBIB_SALDC - Probable protein kinase UbiB OS=Salmonella dublin (strain CT_02021853) GN=ubiB PE=3 SV=1 UBIB_SALPK - Probable protein kinase UbiB OS=Salmonella paratyphi A (strain AKU_12601) GN=ubiB PE=3 SV=1 gi\|204930259, gi... - gi\|204930259\|ref\|ZP_03221236.1\| 2-polyprenylphenol 6-hydroxylase [Salmonella enterica subsp. enteric... gi\|199604796, gi... - gi\|200387698\|ref\|ZP_03214310.1\| 2-polyprenylphenol 6-hydroxylase [Salmonella enterica subsp. enteric... UBIB_SALCH - Probable protein kinase UbiB OS=Salmonella choleraesuis (strain SC-B67) GN=ubiB PE=3 SV=1 UBIB_SALPA - Probable protein kinase UbiB OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=ubiB PE=3 SV=1 gi\|16762162 - gi\|16762162\|ref\|NP_457779.1\| putative ubiquinone biosynthesis protein UbiB [Salmonella enterica subs... UBIB_SALTY - Probable protein kinase UbiB OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=ubiB... gi\|29139286, gi\|... - gi\|29143651\|ref\|NP_806993.1\| putative ubiquinone biosynthesis protein UbiB [Salmonella enterica subs... UBIB_SALTY - Probable ubiquinone biosynthesis protein UbiB OS=Salmonella typhimurium GN=ubiB PE=3 SV=1	418.0	[0..1]	[529..1]
gi\|91190179, gi\|... - gi\|91224933\|ref\|ZP_01260192.1\| putative ubiquinone biosynthesis protein UbiB [Vibrio alginolyticus 1...	418.0	[0..1]	[546..1]
UBIB_SODGM - Probable protein kinase UbiB OS=Sodalis glossinidius (strain morsitans) GN=ubiB PE=3 SV=1	417.0	[0..1]	[544..1]
gi\|89049720, gi\|... - gi\|89074432\|ref\|ZP_01160909.1\| putative ubiquinone biosynthesis protein UbiB [Photobacterium sp. SKA...	416.0	[0..1]	[546..1]
UBIB_PECAS - Probable protein kinase UbiB OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) GN=ubi... UBIB_ERWCT - Probable ubiquinone biosynthesis protein UbiB OS=Erwinia carotovora subsp. atroseptica GN=ubiB PE=3 ...	416.0	[0..1]	[546..1]
UBIB_VIBPA - Probable ubiquinone biosynthesis protein UbiB OS=Vibrio parahaemolyticus GN=ubiB PE=3 SV=1 UBIB_VIBPA - Probable protein kinase UbiB OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=ubiB...	416.0	[0..1]	[546..1]

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Predicted Domain #1

Region A:
Residues: [1-114]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTPGEVRRLY FIIRTFLSYG LDELIPKMRI TLPLRLWRYS LFWMPNRHKD KLLGERLRLA  60
   61 LQELGPVWIK FGQMLSTRRD LFPPHIADQL ALLQDKVAPF DGKLAKQQIE AAMG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [115-546]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GLPVEAWFDD FEIKPLASAS IAQVHTARLK SNGKEVVIKV IRPDILPVIK ADLKLIYRLA  60
   61 RWVPRLLPDG RRLRPTEVVR EYEKTLIDEL NLLRESANAI QLRRNFEDSP MLYIPEVYPD 120
  121 YCSEGMMVME RIYGIPVSDV AALEKNGTNM KLLAERGVQV FFTQVFRDSF FHADMHPGNI 180
  181 FVSYEHPENP KYIGIDCGIV GSLNKEDKRY LAENFIAFFN RDYRKVAELH VDSGWVPPDT 240
  241 NVEEFEFAIR TVCEPIFEKP LAEISFGHVL LNLFNTARRF NMEVQPQLVL LQKTLLYVEG 300
  301 VGRQLYPQLD LWKTAKPFLE SWIKDQVGIP ALVRAFKEKA PFWVEKMPEL PELVYDSLRQ 360
  361 GKYLQHSVDK IARELQSNHV RQGQSRYFLG IGATLVLSGT FLLVSRPEWG LMPGWLMAGG 420
  421 LIAWFVGWRK TR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	51.09691
Match:	2i0eA
Description:	No description for 2i0eA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits