YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|81241278, gi\|...
Organism:	Shigella dysenteriae Sd197
Length:	115 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|81241278, gi|....

Description	E-value	Query Range	Subject Range
gi\|62127655, gi\|... - gi\|62180022\|ref\|YP_216439.1\| hypothetical protein SC1452 [Salmonella enterica subsp. enterica serova... gi\|168229806, gi... - gi\|205335337\|gb\|EDZ22101.1\| putative monothiol glutaredoxin [Salmonella enterica subsp. enterica ser... lcl\|NC_016856.1_... - [gene=ydhD] [protein=hypothetical protein] [protein_id=YP_005237303.1] [location=1521253..1521600] gi\|205327842, gi... - gi\|205327842\|gb\|EDZ14606.1\| putative monothiol glutaredoxin [Salmonella enterica subsp. enterica ser... gi\|167551597, gi... - gi\|205323629\|gb\|EDZ11468.1\| putative monothiol glutaredoxin [Salmonella enterica subsp. enterica ser... gi\|161363512, gi... - gi\|161614148\|ref\|YP_001588113.1\| hypothetical protein SPAB_01888 [Salmonella enterica subsp. enteric... gi\|56127855, gi\|... - gi\|56413598\|ref\|YP_150673.1\| hypothetical protein SPA1420 [Salmonella enterica subsp. enterica serov... gi\|197093999, gi... - gi\|197362522\|ref\|YP_002142159.1\| hypothetical protein SSPA1320 [Salmonella enterica subsp. enterica ... gi\|197241747, gi... - gi\|197263492\|ref\|ZP_03163566.1\| putative monothiol glutaredoxin [Salmonella enterica subsp. enterica... gi\|16760480 - gi\|16760480\|ref\|NP_456097.1\| hypothetical protein STY1689 [Salmonella enterica subsp. enterica serov... gi\|197249772, gi... - gi\|197249772\|ref\|YP_002146612.1\| putative monothiol glutaredoxin [Salmonella enterica subsp. enteric... gi\|194737105, gi... - gi\|194737105\|ref\|YP_002114444.1\| putative monothiol glutaredoxin [Salmonella enterica subsp. enteric... gi\|207857063, gi... - gi\|207857063\|ref\|YP_002243714.1\| hypothetical protein SEN1614 [Salmonella enterica subsp. enterica s... gi\|205352853, gi... - gi\|205352853\|ref\|YP_002226654.1\| hypothetical protein SG1685 [Salmonella enterica subsp. enterica se... gi\|238913166 - gi\|238913166\|ref\|ZP_04657003.1\| hypothetical protein SentesTe_18835 [Salmonella enterica subsp. ente... gi\|199602405, gi... - gi\|200389960\|ref\|ZP_03216571.1\| putative monothiol glutaredoxin [Salmonella enterica subsp. enterica... gi\|197940257, gi... - gi\|198245741\|ref\|YP_002215701.1\| putative monothiol glutaredoxin [Salmonella enterica subsp. enteric... gi\|168463156, gi... - gi\|195633901\|gb\|EDX52253.1\| glutaredoxin-4 [Salmonella enterica subsp. enterica serovar Newport str.... gi\|205346858, gi... - gi\|205346858\|gb\|EDZ33489.1\| putative monothiol glutaredoxin [Salmonella enterica subsp. enterica ser... gi\|168240947, gi... - gi\|205339531\|gb\|EDZ26295.1\| putative monothiol glutaredoxin [Salmonella enterica subsp. enterica ser... gi\|168235504, gi... - gi\|197290954\|gb\|EDY30307.1\| putative monothiol glutaredoxin [Salmonella enterica subsp. enterica ser... gi\|194470567, gi... - gi\|194470567\|ref\|ZP_03076551.1\| putative monothiol glutaredoxin [Salmonella enterica subsp. enterica... gi\|194448379, gi... - gi\|194448379\|ref\|YP_002045471.1\| hypothetical protein SeHA_C1603 [Salmonella enterica subsp. enteric... gi\|194445820, gi... - gi\|194445820\|ref\|YP_002040682.1\| putative monothiol glutaredoxin [Salmonella enterica subsp. enteric... gi\|205343668, gi... - gi\|205343668\|gb\|EDZ30432.1\| putative monothiol glutaredoxin [Salmonella enterica subsp. enterica ser... gi\|213612349 - gi\|213612349\|ref\|ZP_03370175.1\| hypothetical protein SentesTyp_07509 [Salmonella enterica subsp. ent... gi\|213586460 - gi\|213586460\|ref\|ZP_03368286.1\| hypothetical protein SentesTyph_36386 [Salmonella enterica subsp. en... gi\|213426004 - gi\|213426004\|ref\|ZP_03358754.1\| hypothetical protein SentesTyphi_10349 [Salmonella enterica subsp. e... gi\|213161998 - gi\|213161998\|ref\|ZP_03347708.1\| hypothetical protein Salmoneentericaenterica_19157 [Salmonella enter... gi\|16764781, gi\|... - gi\|16764781\|ref\|NP_460396.1\| hypothetical protein STM1433 [Salmonella typhimurium LT2], gi\|16419953\|... gi\|224468585, gi... - gi\|224584058\|ref\|YP_002637856.1\| hypothetical protein SPC_2298 [Salmonella enterica subsp. enterica ... gi\|29137388, gi\|... - gi\|29141760\|ref\|NP_805102.1\| hypothetical protein t1301 [Salmonella enterica subsp. enterica serovar... gi\|214000296 - gi\|214000296\|ref\|ZP_03411031.1\| hypothetical protein Salmonellentericaenterica_06486 [Salmonella ent... gi\|213855188 - gi\|213855188\|ref\|ZP_03383428.1\| hypothetical protein SentesT_14372 [Salmonella enterica subsp. enter... gi\|16502776, gi\|... - gi\|25318360\|pir\|\|AE0695 conserved hypothetical protein STY1689 [imported] - Salmonella enterica subs... gi\|213649692 - gi\|213649692\|ref\|ZP_03379745.1\| hypothetical protein SentesTy_21810 [Salmonella enterica subsp. ente...	153.0	[0..1]	[115..1]
gi\|74312019, gi\|... - gi\|74312019\|ref\|YP_310438.1\| hypothetical protein SSON_1502 [Shigella sonnei Ss046], gi\|73855496\|gb\|...	152.0	[0..1]	[115..1]
gi\|84779938, gi\|... - gi\|85059418\|ref\|YP_455120.1\| hypothetical protein SG1440 [Sodalis glossinidius str. 'morsitans'], gi...	147.0	[0..1]	[115..1]
gi\|86282021, gi\|... - gi\|86357919\|ref\|YP_469811.1\| glutaredoxin protein [Rhizobium etli CFN 42], gi\|86282021\|gb\|ABC91084.1...	147.0	[0..1]	[111..1]
gi\|83952318, gi\|... - gi\|83952318\|ref\|ZP_00961050.1\| glutaredoxin-related protein [Roseovarius nubinhibens ISM], gi\|838373...	145.0	[0..1]	[114..1]
GLRX4_PASMU - Glutaredoxin-4 OS=Pasteurella multocida (strain Pm70) GN=grxD PE=3 SV=1 GLRX4_PASMU - Glutaredoxin-4 OS=Pasteurella multocida GN=grxD PE=3 SV=1	144.0	[0..1]	[110..1]
gi\|15074715 - gi\|15074715\|emb\|CAC46360.1\| Hypothetical protein [Sinorhizobium meliloti 1021] gi\|15965534 - gi\|15965534\|ref\|NP_385887.1\| hypothetical protein SMc00538 [Sinorhizobium meliloti 1021]	144.0	[0..1]	[111..1]
gi\|45775283, gi\|... - gi\|45775287\|gb\|AAS77244.1\| putative glutaredoxin-like protein [uncultured bacterium], gi\|45775283\|gb...	144.0	[0..1]	[110..1]
gi\|66519264 - gi\|66519264\|ref\|XP_625213.1\| PREDICTED: similar to CG14407-PA [Apis mellifera]	143.0	[0..2]	[114..13]
gi\|69297907, gi\|... - gi\|99080957\|ref\|YP_613111.1\| glutaredoxin-like protein [Silicibacter sp. TM1040], gi\|99037237\|gb\|ABF...	143.0	[0..1]	[114..1]

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Predicted Domain #1

Region A:
Residues: [1-115]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTTIEKIQR QIAENPILLY MKGSPKLPSC GFSAQAVQAL AACGERFAYV DILQNPDIRA  60
   61 ELPKYANWPT FPQLWVDGEL VGGCDIVIEM YQRGELQQLI KETAAKYKSE EPDAE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	37.522879
Match:	1ykaA
Description:	Solution structure of Grx4, a monothiol glutaredoxin from E. coli.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits