YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|75212351, gi\|...
Organism:	Escherichia coli B171
Length:	141 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|75212351, gi|....

Description	E-value	Query Range	Subject Range
gi\|30138255, gi\|... - gi\|30248369\|ref\|NP_840439.1\| biopolymer transport protein ExbD/TolR [Nitrosomonas europaea ATCC 1971...	160.0	[0..1]	[141..1]
gi\|83592428, gi\|... - gi\|83592428\|ref\|YP_426180.1\| biopolymer transport protein ExbD/TolR [Rhodospirillum rubrum ATCC 1117... gi\|48765099 - ref\|ZP_00269650.1\| COG0848: Biopolymer transport protein [Rhodospirillum rubrum]	157.0	[0..4]	[140..8]
gi\|195633422, gi... - gi\|195633422\|gb\|EDX51836.1\| TonB system transport protein ExbD [Salmonella enterica subsp. enterica ... gi\|205348458, gi... - gi\|205348458\|gb\|EDZ35089.1\| TonB system transport protein ExbD [Salmonella enterica subsp. enterica ... gi\|205333834, gi... - gi\|205333834\|gb\|EDZ20598.1\| TonB system transport protein ExbD [Salmonella enterica subsp. enterica ... gi\|205331135, gi... - gi\|205331135\|gb\|EDZ17899.1\| TonB system transport protein ExbD [Salmonella enterica subsp. enterica ... gi\|197243685, gi... - gi\|197265430\|ref\|ZP_03165504.1\| TonB system transport protein ExbD [Salmonella enterica subsp. enter... gi\|197248980, gi... - gi\|197248980\|ref\|YP_002148080.1\| TonB system transport protein ExbD [Salmonella enterica subsp. ente... gi\|194470085, gi... - gi\|194470085\|ref\|ZP_03076069.1\| TonB system transport protein ExbD [Salmonella enterica subsp. enter... gi\|168819785, gi... - gi\|205343432\|gb\|EDZ30196.1\| TonB system transport protein ExbD [Salmonella enterica subsp. enterica ... gi\|29139055, gi\|... - gi\|29143421\|ref\|NP_806763.1\| biopolymer transport protein ExbD [Salmonella enterica subsp. enterica ... gi\|205323314, gi... - gi\|205323314\|gb\|EDZ11153.1\| TonB system transport protein ExbD [Salmonella enterica subsp. enterica ... gi\|16761934 - gi\|16761934\|ref\|NP_457551.1\| biopolymer transport protein ExbD [Salmonella enterica subsp. enterica ... gi\|161616140, gi... - gi\|161616140\|ref\|YP_001590105.1\| biopolymer transport protein ExbD [Salmonella enterica subsp. enter... gi\|25301409, gi\|... - gi\|25301409\|pir\|\|AE0886 biopolymer transport ExbD protein STY3331 [imported] - Salmonella enterica s... gi\|16421713, gi\|... - gi\|16766458\|ref\|NP_462073.1\| biopolymer transport protein ExbD [Salmonella typhimurium LT2], gi\|1642... gi\|238909958 - gi\|238909958\|ref\|ZP_04653795.1\| biopolymer transport protein ExbD [Salmonella enterica subsp. enteri... lcl\|NC_016856.1_... - [gene=exbD] [protein=biopolymer transport protein ExbD] [protein_id=YP_005239323.1] [location=comple... gi\|207858417, gi... - gi\|207858417\|ref\|YP_002245068.1\| biopolymer transport protein ExbD [Salmonella enterica subsp. enter... gi\|200389196, gi... - gi\|200389196\|ref\|ZP_03215808.1\| TonB system transport protein ExbD [Salmonella enterica subsp. enter... gi\|197937549, gi... - gi\|198243033\|ref\|YP_002217136.1\| TonB system transport protein ExbD [Salmonella enterica subsp. ente... gi\|197095505, gi... - gi\|197364028\|ref\|YP_002143665.1\| biopolymer transport protein ExbD [Salmonella enterica subsp. enter... gi\|213980699 - gi\|213980699\|ref\|ZP_03407958.1\| biopolymer transport protein ExbD [Salmonella enterica subsp. enteri... gi\|213851961 - gi\|213851961\|ref\|ZP_03381493.1\| biopolymer transport protein ExbD [Salmonella enterica subsp. enteri... gi\|213647424 - gi\|213647424\|ref\|ZP_03377477.1\| biopolymer transport protein ExbD [Salmonella enterica subsp. enteri... gi\|213585737 - gi\|213585737\|ref\|ZP_03367563.1\| biopolymer transport protein ExbD [Salmonella enterica subsp. enteri... gi\|62181670, gi\|... - gi\|62181670\|ref\|YP_218087.1\| biopolymer transport protein ExbD [Salmonella enterica subsp. enterica ... gi\|56129356, gi\|... - gi\|56415099\|ref\|YP_152174.1\| biopolymer transport protein ExbD [Salmonella enterica subsp. enterica ...	157.0	[0..1]	[141..1]
gi\|238716296, gi... - gi\|77959548\|ref\|ZP_00823567.1\| COG0848: Biopolymer transport protein [Yersinia bercovieri ATCC 43970... gi\|238699402, gi... - gi\|238762417\|ref\|ZP_04623388.1\| Biopolymer transport ExbD protein [Yersinia kristensenii ATCC 33638]...	155.0	[0..1]	[141..1]
gi\|81242375, gi\|... - gi\|82778227\|ref\|YP_404576.1\| biopolymer transport protein ExbD [Shigella dysenteriae Sd197], gi\|8124...	154.0	[0..1]	[141..1]
gi\|23015567 - gi\|23015567\|ref\|ZP_00055339.1\| COG0848: Biopolymer transport protein [Magnetospirillum magnetotactic...	154.0	[0..4]	[135..8]
gi\|82947153, gi\|... - gi\|83312312\|ref\|YP_422576.1\| biopolymer transport protein [Magnetospirillum magneticum AMB-1], gi\|82...	154.0	[0..4]	[135..7]
gi\|71549805, gi\|... - gi\|71549805\|ref\|ZP_00669987.1\| Biopolymer transport protein ExbD/TolR [Nitrosomonas eutropha C71], g...	154.0	[0..1]	[140..1]
gi\|153947381, gi... - gi\|153947381\|ref\|YP_001399585.1\| biopolymer transport protein ExbD [Yersinia pseudotuberculosis IP 3... gi\|162352361, gi... - gi\|77636101\|ref\|ZP_00798178.1\| COG0848: Biopolymer transport protein [Yersinia pestis Angola], gi\|16... gi\|165939866, gi... - gi\|89102622\|ref\|ZP_01175242.1\| COG0848: Biopolymer transport protein [Yersinia pestis biovar Orienta... gi\|167398543, gi... - gi\|167398543\|ref\|ZP_02304067.1\| tonB system transport protein ExbD [Yersinia pestis biovar Antiqua s... gi\|166963223, gi... - gi\|167419229\|ref\|ZP_02310982.1\| tonB system transport protein ExbD [Yersinia pestis biovar Orientali... gi\|167425083, gi... - gi\|167425083\|ref\|ZP_02316836.1\| tonB system transport protein ExbD [Yersinia pestis biovar Mediaeval... gi\|167466385 - gi\|167466385\|ref\|ZP_02331089.1\| tonB system transport protein ExbD [Yersinia pestis FV-1] gi\|21960453, gi\|... - gi\|22127368\|ref\|NP_670791.1\| biopolymer transport protein ExbD [Yersinia pestis KIM], gi\|21960453\|gb... gi\|25301405 - pir\|\|AE0084 ExbD/TolR-family transport protein YPO0683 [imported] - Yersinia pestis (strain CO92) gi\|115346485, gi... - gi\|218927874\|ref\|YP_002345749.1\| biopolymer transport protein ExbD [Yersinia pestis CO92], gi\|161210... gi\|45437626, gi\|... - gi\|45442760\|ref\|NP_994299.1\| biopolymer transport protein ExbD [Yersinia pestis biovar Microtus str.... gi\|150260287, gi... - gi\|150260287\|ref\|ZP_01917015.1\| ExbD/TolR-family transport protein [Yersinia pestis CA88-4125], gi\|1... gi\|229837365, gi... - gi\|229837365\|ref\|ZP_04457528.1\| membrane spanning protein in TonB-ExbB-ExbD complex [Yersinia pestis... gi\|229696943, gi... - gi\|229840577\|ref\|ZP_04460736.1\| membrane spanning protein in TonB-ExbB-ExbD complex [Yersinia pestis... gi\|229842873, gi... - gi\|229842873\|ref\|ZP_04463025.1\| membrane spanning protein in TonB-ExbB-ExbD complex [Yersinia pestis... gi\|166009087, gi... - gi\|166009087\|ref\|ZP_02229985.1\| tonB system transport protein ExbD [Yersinia pestis biovar Antiqua s... gi\|229900903, gi... - gi\|229900903\|ref\|ZP_04516027.1\| membrane spanning protein in TonB-ExbB-ExbD complex [Yersinia pestis... gi\|166211954, gi... - gi\|166211954\|ref\|ZP_02237989.1\| tonB system transport protein ExbD [Yersinia pestis biovar Antiqua s...	154.0	[0..1]	[140..1]
gi\|23469540, gi\|... - gi\|66043474\|ref\|YP_233315.1\| biopolymer transport protein ExbD [Pseudomonas syringae pv. syringae B7...	154.0	[0..1]	[141..1]

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Predicted Domain #1

Region A:
Residues: [1-141]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAMHLNENLD DNGEMHDINV TPFIDVMLVL LIIFMVAAPL ATVDVKVNLP ASTSTPQPRP  60
   61 EKPVYLSVKA DNSMFIGNDP VTDETMITAL NALTEGKKDT TIFFRADKTV DYETLMKVMD 120
  121 TLHQAGYLKI GLVGEETAKA K

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	20.113509
Match:	PF02472.7
Description:	No description for PF02472.7 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.923	N/A	N/A	c.23.5	Flavoproteins

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits