YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|90075212, gi\|...
Organism:	Macaca fascicularis
Length:	192 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|90075212, gi|....

Description	E-value	Query Range	Subject Range
gi\|60653317 - gi\|60653317\|gb\|AAX29353.1\| ribosomal protein L9 [synthetic construct]	2.0E-73	[1..192]	[1..192]
RL9_MACFA - 60S ribosomal protein L9 OS=Macaca fascicularis GN=RPL9 PE=2 SV=1	4.0E-73	[1..192]	[1..192]
gi\|607793, gi\|21... - gi\|607793\|gb\|AAB01041.1\| ribosomal protein L9, pir\|\|S65792 ribosomal protein L9, cytosolic - human,...	5.0E-73	[1..192]	[1..192]
gi\|114620151 - gi\|114620151\|ref\|XP_001152896.1\| PREDICTED: similar to rat ribosomal protein L9 homologue isoform 2 ...	6.0E-73	[1..192]	[1..192]
RL9_BOVIN - 60S ribosomal protein L9 OS=Bos taurus GN=RPL9 PE=2 SV=1	9.0E-73	[1..192]	[1..192]
RL9_PONPY - 60S ribosomal protein L9 - Pongo pygmaeus (Orangutan) RL9_PONAB - 60S ribosomal protein L9 OS=Pongo abelii GN=RPL9 PE=2 SV=1	1.0E-72	[1..192]	[1..192]
RL9_MOUSE - 60S ribosomal protein L9 OS=Mus musculus GN=Rpl9 PE=1 SV=2	2.0E-72	[1..192]	[1..192]
gi\|57706 - gi\|57706\|emb\|CAA36002.1\| unnamed protein product [Rattus rattus] RL9_RAT - 60S ribosomal protein L9 OS=Rattus norvegicus GN=Rpl9 PE=1 SV=1	2.0E-72	[1..192]	[1..192]

Back

Predicted Domain #1

Region A:
Residues: [1-192]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTILSNQTV DIPENVDITL KGRTVIVKGP RGTLRRDFNH INVELSLLGK KKKRLRVDKW  60
   61 WGNRKELATV RTICSHVQNM IKGVTLGFRY KMRSVYAHFP INVVIQENGS LVEIRNFLGE 120
  121 KYIRRVRMRP GVACSVSQAQ KDELILEGND IELVSNSAAL IQQATTVKNK DIRKFLDGIY 180
  181 VSEKGTVQQA DE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	46.30103
Match:	1s1iH
Description:	Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1I, Contains 60S subunit. The 40S Ribosomal Subunit Is In File 1S1H.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits