YRC Public Data Repository - Protein Structure Prediction

Protein:	RS8_BOVIN
Organism:	Bos taurus
Length:	208 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RS8_BOVIN.

Description	E-value	Query Range	Subject Range
gi\|94367685 - gi\|94367685\|ref\|XP_979270.1\| PREDICTED: similar to ribosomal protein S8 [Mus musculus]	351.0	[0..1]	[208..212]
gi\|50751488 - gi\|50751488\|ref\|XP_422423.1\| PREDICTED: similar to ribosomal protein S8 [Gallus gallus]	347.0	[0..1]	[208..58]
gi\|60417164 - gi\|60417164\|emb\|CAH57693.1\| 40S ribosomal protein S8 [Platichthys flesus]	338.0	[0..1]	[208..1]
gi\|68364966 - gi\|68364966\|ref\|XP_686530.1\| PREDICTED: similar to ribosomal protein S8 [Danio rerio]	338.0	[0..2]	[208..29]
RS8_ICTPU - 40S ribosomal protein S8 OS=Ictalurus punctatus GN=rps8 PE=2 SV=3	333.0	[0..1]	[208..1]
gi\|109075664 - gi\|109075664\|ref\|XP_001085841.1\| PREDICTED: similar to ribosomal protein S8 [Macaca mulatta]	333.0	[0..1]	[208..1]
gi\|62857979, gi\|... - gi\|89272006\|emb\|CAJ83695.1\| ribosomal protein s8 [Xenopus tropicalis], gi\|62857979\|ref\|NP_001016566....	332.0	[0..1]	[208..1]

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Predicted Domain #1

Region A:
Residues: [1-208]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGISRDNWHK RRKTGGKRKP YHKKRKYELG RPAANTKIGP RRIHTVRVRG GNKKYRALRL  60
   61 DVGNFSWGSE CCTRKTRIID VVYNASNNEL VRTKTLVKNC IVLIDSTPYR QWYESHYALP 120
  121 LGRKKGAKLT PEEEEILNKK RSKKIQKKYD ERKKNAKISS LLEEQFQQGK LLACIASRPG 180
  181 QCGRADGYVL EGKELEFYLR KIKARKGK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	107.619789
Match:	PF01201.13
Description:	No description for PF01201.13 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits