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View Structure Prediction Details

Protein: gi|123995921, gi...
Organism: synthetic construct
Length: 211 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|123995921, gi....

Description E-value Query
Range
Subject
Range
gi|74267768 - gi|74267768|gb|AAI02866.1| RPL13 protein [Bos taurus]
3.0E-96 [1..211] [1..211]
gi|94381470, gi|... - gi|94382983|ref|XP_998719.1| PREDICTED: similar to ribosomal protein L13 [Mus musculus], gi|94381470...
2.0E-86 [1..211] [1..211]
RL13_RAT - 60S ribosomal protein L13 OS=Rattus norvegicus GN=Rpl13 PE=1 SV=2
4.0E-86 [1..211] [1..211]
gi|60653373 - gi|60653373|gb|AAX29381.1| ribosomal protein L13 [synthetic construct]
2.0E-85 [1..211] [1..211]
gi|73956810, gi|... - gi|73956810|ref|XP_860360.1| PREDICTED: similar to ribosomal protein L13 isoform 3 [Canis familiaris...
9.0E-85 [1..211] [1..211]
gi|109129557 - gi|109129557|ref|XP_001092801.1| PREDICTED: similar to ribosomal protein L13 [Macaca mulatta]
2.0E-84 [1..211] [1..211]

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Predicted Domain #1
Region A:
Residues: [1-211]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPSRNGMVL KPHFHKDWQR RVATWFNQPA RKIRRRKARQ AKARRIAPRP ASGPIRPIVR  60
   61 CPTVRYHTKV RAGRGFSLEE LRVAGIHKKV ARTIGISVDP RRRNKSTESL QANVQRLKEY 120
  121 RSKLILFPRK PSAPKKGDSS AEELKLATQL TGPVMPVRNV YKKEKARVIT EEEKNFKAFA 180
  181 SLRMARANAR LFGIRAKRAK EAAEQDVEKK K

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 136.275724
Match: PF01294.9
Description: No description for PF01294.9 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle