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View Structure Prediction Details

Protein: CE39282
Organism: Caenorhabditis elegans
Length: 663 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE39282.

Description E-value Query
Range
Subject
Range
gi|39598247, gi|... - gi|39598247|emb|CAE68939.1| Hypothetical protein CBG14919 [Caenorhabditis briggsae], gi|187027553|em...
gi|157745457 - gi|157745457|ref|XP_001667825.1| Hypothetical protein CBG14919 [Caenorhabditis briggsae AF16]
425.0 [0..1] [657..1]

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Predicted Domain #1
Region A:
Residues: [1-264]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNDRISINLI YLVLTFCCVS AATVRTAKND DIQKFTIQMI GYSPQKTDDY VAVSIEATPG  60
   61 YVVAFEPMAH ADRVHHMLLY GCTMPASEQG FWRGMETCGW GGGSYILYAW ARNAPNLVLP 120
  121 KDVAFSVGHE QDGIKYFVLQ VHYAQPFAGE VHDFSGVTMH ISQKKPMNLA AVMLFVSGTP 180
  181 IPPQLPAFQN NITCMFESST PIHPFAFRTH THAMGRLVSA FFKHDGHWTK IGKRNPQWPQ 240
  241 LFEGIPSKLM IGSGDQMSAS CRFD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 71.39794
Match: 1yipA
Description: Oxidized Peptidylglycine Alpha-Hydroxylating Monooxygenase (PHM) in a New Crystal Form
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.499354693747575 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [265-663]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SMDKNRTVNM GAMGVDEMCN FYMMFHYDAK LDNPYPQGAI CAKDYPSKMI DYPKDGFELL  60
   61 PSRPELEHHA HQSKVPFGIV QEAIHENLGG VKLGQVAGLA FNNEQQLLVF QRAGRVWDAS 120
  121 TFDNYNILLD KKPIADPVIL VISYSGNQTK LERKLGGGQF YLPHGIYVDK DGFVYTTDVG 180
  181 SHTVAKWKIE GNELKNIWTS GELLMPGSDQ HHYCKPTGIT RVEDQLYVTD GYCNSRVVVL 240
  241 DLNGKRIRQF GLPGEDAGQF NLPHDIVSDS AGRLLVTDRE NGRVQHMTTQ GHVIEEFKST 300
  301 MFTNIYSAAS HEDYVFMVPG RPIMGHETEG IAVFVGRSGT GLIEYAFGPT TKGKREQMGP 360
  361 QFGQPHCLRV CPDGGHIFVG DIAEGKARLW QFKIRHDQN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 40.39794
Match: 2ovpB
Description: No description for 2ovpB was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle