YRC Public Data Repository - Protein Structure Prediction

Protein:	RT28_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	288 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RT28_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|34500108 - gi\|34500108\|gb\|AAQ73637.1\| ribosomal protein S15 precursor-like protein [Epichloe festucae]	221.0	[0..32]	[286..34]
gi\|49091698, gi\|... - gi\|67525431\|ref\|XP_660777.1\| hypothetical protein AN3173.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	219.0	[0..7]	[287..6]
gi\|85082073 - gi\|85082073\|ref\|XP_956841.1\| hypothetical protein NCU03394 [Neurospora crassa OR74A] gi\|18376366, gi\|... - gi\|32404078\|ref\|XP_322652.1\| predicted protein [Neurospora crassa], gi\|28917920\|gb\|EAA27605.1\| conse...	207.0	[0..33]	[287..35]
gi\|18394286, gi\|... - gi\|8927660\|gb\|AAF82151.1\|AC034256_15 Contains similarity to an unknown protein T21F11.5 gi\|6730725 f...	206.0	[0..14]	[280..135]
gi\|46100004, gi\|... - gi\|71020129\|ref\|XP_760295.1\| hypothetical protein UM04148.1 [Ustilago maydis 521], ref\|XP_401763.1\| ...	196.0	[0..38]	[286..58]
gi\|46138783, gi\|... - gi\|46138783\|ref\|XP_391082.1\| hypothetical protein FG10906.1 [Gibberella zeae PH-1], gi\|42551670\|gb\|E...	189.0	[0..33]	[287..35]
gi\|70999139, gi\|... - gi\|70999139\|ref\|XP_754291.1\| ribosomal protein S15 [Aspergillus fumigatus Af293], gi\|66851928\|gb\|EAL... gi\|159127308 - gi\|159127308\|gb\|EDP52423.1\| conserved hypothetical protein [Aspergillus fumigatus A1163]	188.0	[0..9]	[287..8]
gi\|83770784 - gi\|83770784\|dbj\|BAE60917.1\| unnamed protein product [Aspergillus oryzae] gi\|169763712 - gi\|169763712\|ref\|XP_001727756.1\| hypothetical protein [Aspergillus oryzae RIB40]	186.0	[0..8]	[287..7]
gi\|12005982 - gi\|12005982\|gb\|AAG44697.1\|AF265439_1 DC37 [Homo sapiens]	178.0	[0..89]	[277..22]

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Predicted Domain #1

Region A:
Residues: [1-205]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLFEGAFQP WKLASTNLMQ QCLLLNKKSQ FHTTCILQGL KKQKANQRRK QNLKRREELR  60
   61 KQNLDTLADP IIGHSSEWIA RLLKPYEILV ERKKPNFPIR SIKFPASMET INLIVEKFEK 120
  121 IRASATEETK DFIKLNEVNE FPSSDTSLES NQDGFERLHP LAERLERMSQ LSDLRKESIH 180
  181 RIFNIENSNS KTLRLNNKQL AVESF

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [206-288]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ARNERDTGSP EVQAAVYTSR ILALSDHCKN HKKDQTGKRM LRYYVHQRQR MLKYLRKVNF  60
   61 DRYVHCIKNL GLTDELVLRE VTQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.39794
Match:	2qalO
Description:	No description for 2qalO was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits