YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|70867008, gi\|...
Organism:	Trypanosoma cruzi
Length:	85 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|70867008, gi|....

Description	E-value	Query Range	Subject Range
gi\|70874234, gi\|... - gi\|70874234\|gb\|EAN87948.1\| hypothetical protein, conserved [Trypanosoma cruzi], gi\|70869434\|gb\|EAN84... gi\|71406690, gi\|... - gi\|71415465\|ref\|XP_809799.1\| hypothetical protein [Trypanosoma cruzi strain CL Brener], gi\|71406690\|...	64.0	[0..34]	[85..1]
gi\|62360338, gi\|... - gi\|70802054\|gb\|AAZ11960.1\| hypothetical protein, conserved [Trypanosoma brucei], gi\|62360338\|gb\|AAX8... gi\|71753937, gi\|... - gi\|72390449\|ref\|XP_845519.1\| hypothetical protein [Trypanosoma brucei TREU927], gi\|71753937\|ref\|XP_8...	63.0	[0..34]	[85..1]
gi\|42548147, gi\|... - gi\|46116420\|ref\|XP_384228.1\| hypothetical protein FG04052.1 [Gibberella zeae PH-1], gi\|42548147\|gb\|E...	60.0	[0..35]	[82..4]
gi\|50421925, gi\|... - gi\|50421925\|ref\|XP_459521.1\| hypothetical protein DEHA0E05368g [Debaryomyces hansenii CBS767], gi\|49...	59.0	[0..34]	[83..1]
gi\|67537534, gi\|... - gi\|67537534\|ref\|XP_662541.1\| hypothetical protein AN4937.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	58.0	[0..35]	[82..4]

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Predicted Domain #1

Region A:
Residues: [1-85]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCVWVCNFSC CLLPLIFVLR KRPLQPQRRH PPTMSSRQGG KQKPLKAPKK ERLDDDEADI  60
   61 AFKQRMREQQ RAEKEAIAKL KGGKK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	20.721246
Match:	PF09072.1
Description:	No description for PF09072.1 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits