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View Structure Prediction Details

Protein: gish-PG
Organism: Drosophila melanogaster
Length: 476 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gish-PG.

Description E-value Query
Range
Subject
Range
gish-PE - The gene gilgamesh is referred to in FlyBase by the symbol Dmel\gish (CG6963, FBgn0250823). It is a ...
326.0 [0..10] [476..2]

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Predicted Domain #1
Region A:
Residues: [1-420]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRKYLYIQK TNIKEENGGG PQTTTAGPSA GNVANATTAL AGGKSSSNNM YSTRQSVSTT  60
   61 TGVLMVGPNF RVGKKIGCGN FGELRLGKNL YNNEHVAIKM EPMKSKAPQL HLEYRFYKLL 120
  121 GSHADNAPDG IPRIYHLGTC GGRYNAMVLE LLGLSLEDLF NICARKFSLK TVLMIAKQLL 180
  181 HRIEYVHSRH LIYRDVKPEN FLIGRTSTKR EKIIHIIDFG LAKEYIDLDT NRHIPYREHK 240
  241 SLTGTARYMS INTHMGREQS RRDDLEALGH MFMYFLRGSL PWQGLKADTL KERYQKIGDT 300
  301 KRATPIEVLC DGHPEEFATY LRYVRRLDFF ETPDYDFLRR LFQDLFDRKG YTDEGEFDWT 360
  361 GKTMSTPVGS LQTGHEVIIS PNKDRHNVTA KTNAKGGVAA WPDVPKPGAT LGNLTPADRH 420
  421 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 59.0
Match: 2chlA
Description: No description for 2chlA was found.

Predicted Domain #2
Region A:
Residues: [421-476]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSVQVVSSTN GELNPDDPTA GHSNTPITQQ PEVEVVDETK CCCFFKRKKK KSTRQK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle