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View Structure Prediction Details

Protein: Axs-PB
Organism: Drosophila melanogaster
Length: 255 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Axs-PB.

Description E-value Query
Range
Subject
Range
Axs-PA - The gene Abnormal X segregation is referred to in FlyBase by the symbol Dmel\Axs (CG9703, FBgn000015...
gi|195567158, gi... - gi|195567158|ref|XP_002107137.1| GD15734 [Drosophila simulans], gi|194204538|gb|EDX18114.1| GD15734 ...
gi|194124125, gi... - gi|195351520|ref|XP_002042282.1| GM13377 [Drosophila sechellia], gi|194124125|gb|EDW46168.1| GM13377...
233.0 [0..1] [254..1]

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Predicted Domain #1
Region A:
Residues: [1-82]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEDAKSPGP RTRNIIENQL FRRQRSLKLE ALQRQRTLDS NDGVEGLGAD TEPFDKTHIV  60
   61 IIFTEKAKLR HCQDVEKIIQ EF

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [83-190]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GIQTTLEIVG KTEKYLYLSA SVDTLLRLAD AAELEKMTTT HSMQKFNHGC ISDFLLPGMG  60
   61 KEQILRYCEI PVLIKDVIQD GIKSYVQKGY IEDMFPLHDI LYLERFNW

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [191-255]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NLKRTKLPIE DIRNYFGSSI GLYFGFIEFY TKALIFPSLF GILQYVFDLN ISLVCSFYVV  60
   61 WTTVS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
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