YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CE39276
Organism: Caenorhabditis elegans
Length: 343 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE39276.

Description E-value Query
Range
Subject
Range
gi|49129385, gi|... - gi|67903568|ref|XP_682040.1| hypothetical protein AN8771.2 [Aspergillus nidulans FGSC A4], ref|XP_41...
194.0 [0..6] [341..1328]

Back

Predicted Domain #1
Region A:
Residues: [1-343]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLDLPRCEK GSSGKLSDEE LLARTIEKAL KTKKLAQSPN MTSSIKVETS IKVEDLLDQI  60
   61 GIWHPYPLFI TFSMAFLWLL SVMPTMSPSY MAPSSPCTLD NCSFVTVQNE FNITKTLIDP 120
  121 GEMTSSIFFL GNGILGQIYA VAADRIGRRP VLIASLFISG LSGIGAAYAP TFEIMLIGRF 180
  181 FQGSCFTALT MINWVMCCES ISFSGHGYAS VLFGLCWVIG YCSVSPLAMY FSTWRYVQLA 240
  241 TSVPCVLFGI LMMFTLPESF SFLVAKRKRD DLVKWIEMAS RVGNEEIDYD ADQIVDMSSR 300
  301 EEDNESLLQT LKLVLQSKLM VTNTAVETFL WKFFDKIFTI LKY

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 14.522879
Match: 1pw4A
Description: Crystal Structure of the Glycerol-3-Phosphate Transporter from E.Coli
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle