YRC Public Data Repository - Protein Structure Prediction

Protein:	TRPA_CAMJR
Organism:	Campylobacter jejuni RM1221
Length:	249 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TRPA_CAMJR.

Description	E-value	Query Range	Subject Range
gi\|186464184, gi... - gi\|23128273\|ref\|ZP_00110124.1\| COG0159: Tryptophan synthase alpha chain [Nostoc punctiforme PCC 7310...	323.0	[0..2]	[249..8]
gi\|17129756, gi\|... - gi\|17227907\|ref\|NP_484455.1\| tryptophan synthase subunit alpha [Nostoc sp. PCC 7120], gi\|17129756\|db... gi\|25291895 - pir\|\|AB1858 tryptophan synthase alpha chain [imported] - Nostoc sp. (strain PCC 7120)	322.0	[0..2]	[249..8]
gi\|67925738, gi\|... - gi\|67925738\|ref\|ZP_00519045.1\| Tryptophan synthase, alpha chain [Crocosphaera watsonii WH 8501], gi\|...	321.0	[0..2]	[248..8]
gi\|86605970, gi\|... - gi\|86605970\|ref\|YP_474733.1\| tryptophan synthase subunit alpha [Synechococcus sp. JA-3-3Ab], gi\|8655... gi\|86605970 - gi\|86605970\|ref\|YP_474733.1\| tryptophan synthase, alpha subunit [Cyanobacteria bacterium Yellowstone...	318.0	[0..2]	[248..9]
TRPA_SYNP2 - Tryptophan synthase alpha chain OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=trpA P...	318.0	[0..2]	[248..8]
gi\|27262488 - gi\|27262488\|gb\|AAN87525.1\| Tryptophan synthase alpha chain [Heliobacillus mobilis]	316.0	[0..2]	[249..14]
TRPA_ANAVT - Tryptophan synthase alpha chain OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=trpA PE=3 S...	316.0	[0..2]	[248..8]

Back

Predicted Domain #1

Region A:
Residues: [1-249]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVDFRKFYKE NANVAYTVLG YPNLQTSEAF LQRLDQSPID ILELGVAYSD PIADGEIIAD  60
   61 AAKIALDQGV DIHSVFELLA RIKTKKALVF MVYYNLIFSY GLEKFVKKAK SLGICALIVP 120
  121 ELSFEESDDL IKECERYNIA LITLVSVTTP KERVKKLVKH AKGFIYLLAS IGITGTKSVE 180
  181 EAILQDKVKE IRSFTNLPIF VGFGIQNNQD VKRMRKVADG VIVGTSIVKC FKQGNLDIIM 240
  241 KDIEEIFKK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	78.69897
Match:	2ekcA
Description:	No description for 2ekcA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits