YRC Public Data Repository - Protein Structure Prediction

Protein:	DGOD_ECOLI
Organism:	Escherichia coli
Length:	382 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DGOD_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|56380332, gi\|... - gi\|56420490\|ref\|YP_147808.1\| galactonate dehydratase [Geobacillus kaustophilus HTA426], gi\|56380332\|...	355.0	[0..1]	[382..1]
gi\|46315136, gi\|... - gi\|78067463\|ref\|YP_370232.1\| galactonate dehydratase [Burkholderia sp. 383], gi\|77968208\|gb\|ABB09588...	350.0	[0..1]	[382..1]
gi\|52787747, gi\|... - gi\|52787747\|ref\|YP_093576.1\| hypothetical protein BLi04070 [Bacillus licheniformis ATCC 14580], gi\|5...	350.0	[0..1]	[382..1]
gi\|67663959, gi\|... - gi\|67663959\|ref\|ZP_00461237.1\| Mandelate racemase/muconate lactonizing enzyme:Mandelate racemase/muc... gi\|84355722 - gi\|84355722\|ref\|ZP_00980597.1\| COG4948: L-alanine-DL-glutamate epimerase and related enzymes of enol... gi\|206559330, gi... - gi\|206559330\|ref\|YP_002230091.1\| galactonate dehydratase [Burkholderia cenocepacia J2315], gi\|198035... gi\|118655190, gi... - gi\|170734030\|ref\|YP_001765977.1\| galactonate dehydratase [Burkholderia cenocepacia MC0-3], gi\|169817...	350.0	[0..1]	[382..1]
gi\|167360365, gi... - gi\|241206453\|ref\|YP_002977549.1\| Mandelate racemase/muconate lactonizing protein [Rhizobium legumino... gi\|116253970, gi... - gi\|116253970\|ref\|YP_769808.1\| putative epimerase [Rhizobium leguminosarum bv. viciae 3841], gi\|11525...	349.0	[0..1]	[382..1]
gi\|23099670, gi\|... - gi\|23099670\|ref\|NP_693136.1\| hypothetical protein OB2215 [Oceanobacillus iheyensis HTE831], gi\|22777...	349.0	[0..1]	[382..1]
gi\|67091168, gi\|... - gi\|67661240\|ref\|ZP_00458560.1\| Mandelate racemase/muconate lactonizing enzyme:Mandelate racemase/muc...	349.0	[0..1]	[382..1]
gi\|134296869, gi... - gi\|67549010\|ref\|ZP_00426886.1\| Mandelate racemase/muconate lactonizing enzyme:Mandelate racemase/muc...	349.0	[0..1]	[382..1]
gi\|170698996, gi... - gi\|170698996\|ref\|ZP_02890054.1\| Mandelate racemase/muconate lactonizing protein [Burkholderia ambifa... gi\|74014271, gi\|... - gi\|74014271\|ref\|ZP_00684900.1\| Mandelate racemase/muconate lactonizing enzyme [Burkholderia ambifari... gi\|118697003, gi... - gi\|172061632\|ref\|YP_001809284.1\| galactonate dehydratase [Burkholderia ambifaria MC40-6], gi\|1719941...	349.0	[0..1]	[382..1]
gi\|84362795 - gi\|84362795\|ref\|ZP_00987408.1\| COG4948: L-alanine-DL-glutamate epimerase and related enzymes of enol...	348.0	[0..1]	[382..1]

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Predicted Domain #1

Region A:
Residues: [1-382]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKITKITTYR LPPRWMFLKI ETDEGVVGWG EPVIEGRART VEAAVHELGD YLIGQDPSRI  60
   61 NDLWQVMYRA GFYRGGPILM SAIAGIDQAL WDIKGKVLNA PVWQLMGGLV RDKIKAYSWV 120
  121 GGDRPADVID GIKTLREIGF DTFKLNGCEE LGLIDNSRAV DAAVNTVAQI REAFGNQIEF 180
  181 GLDFHGRVSA PMAKVLIKEL EPYRPLFIEE PVLAEQAEYY PKLAAQTHIP LAAGERMFSR 240
  241 FDFKRVLEAG GISILQPDLS HAGGITECYK IAGMAEAYDV TLAPHCPLGP IALAACLHID 300
  301 FVSYNAVLQE QSMGIHYNKG AELLDFVKNK EDFSMVGGFF KPLTKPGLGV EIDEAKVIEF 360
  361 SKNAPDWRNP LWRHEDNSVA EW

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	60.69897
Match:	2o56A
Description:	No description for 2o56A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits