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View Structure Prediction Details

Protein: CE38579
Organism: Caenorhabditis elegans
Length: 297 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE38579.

Description E-value Query
Range
Subject
Range
gi|89342053, gi|... - gi|89342053|ref|ZP_01194293.1| Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gl...
195.0 [0..5] [282..50]

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Predicted Domain #1
Region A:
Residues: [1-297]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTNIRVGVFP LENDAQTCFE VPNCKHPGAE VEILKMIFRL IGVNYTMIDV WKKFGQQYDF  60
   61 GSKQKNGNWS GMIGLLQSDQ LDMIGLSMRI APEREEVVLF SYPTRVFETS IQSFPVSSRM 120
  121 LLLIILIATF FISQLYQTDM LAFLSVPLTY SIPFRSIKQA LELVEHQKMY IAAFENQTLL 180
  181 CTPTTCSLFQ KSIDKNPVRR ANKDTEVQDL IKKGGIYQST VDSALLPGQL SWLNVDQKFL 240
  241 IVRDEDAPSY YVAFTFSKKH KKLLKKFNSA LIEVLPAVSL ITIGHGYNTK KKPFEVS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 41.39794
Match: 1gggA
Description: Glutamine-binding protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.144254316055515 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle