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View Structure Prediction Details

Protein: CE38454
Organism: Caenorhabditis elegans
Length: 281 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE38454.

Description E-value Query
Range
Subject
Range
gi|85101253 - gi|85101253|ref|XP_961117.1| hypothetical protein ( (AL513466) conserved hypothetical protein [Neuro...
gi|28922656, gi|... - gi|32404918|ref|XP_323072.1| hypothetical protein ( (AL513466) conserved hypothetical protein [Neuro...
165.0 [0..22] [263..740]

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Predicted Domain #1
Region A:
Residues: [1-101]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLGDEYGSLV VVATVATLVI VAASWILRHS PIIINAVFAV VISIAIFAFS SLVNRSIPET  60
   61 FELLFRMVIG PQDSWNRVYM VAFWLANVAI SVIFCAYVSS I

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [102-281]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GRSSTVHRKF FHLTVSLIYI SGILLDPLFS WLCAWLWLCI FTLVELLRYL NVPPWGGVLN  60
   61 EHLLIFKDAQ DSELLLTPIY LLPTLAIFAG VAAVGVGDSM AAIVGSKFGV TKWKGSKKSL 120
  121 EGSIAMLFSM LVFLLTTNLF IKDSSSTISI IIASLVATLA EAFINSMDNF ILPLVTYLIL 180
  181 

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 3.346787
Match: PF01148.11
Description: No description for PF01148.11 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle