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View Structure Prediction Details

Protein: aak-1
Organism: Caenorhabditis elegans
Length: 589 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for aak-1.

Description E-value Query
Range
Subject
Range
gi|37993687 - gi|37993687|gb|AAR06927.1| AMP-activated protein kinase alpha subunit 2 [Caenorhabditis elegans]
466.0 [0..1] [589..1]

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Predicted Domain #1
Region A:
Residues: [1-287]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPSGRFDRT IALAGTGHLK IGNFVIKETI GKGAFGAVKR GTHIQTGYDV AIKILNRGRM  60
   61 KGLGTVNKTR NEIDNLQKLT HPHITRLFRV ISTPSDIFLV MELVSGGELF SYITRKGALP 120
  121 IRESRRYFQQ IISGVSYCHN HMIVHRDLKP ENLLLDANKN IKIADFGLSN YMTDGDLLST 180
  181 ACGSPNYAAP ELISNKLYVG PEVDLWSCGV ILYAMLCGTL PFDDQNVPTL FAKIKSGRYT 240
  241 VPYSMEKQAA DLISTMLQVD PVKRADVKRI VNHSWFRIDL PYYLFPE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 79.522879
Match: 2h6dA
Description: No description for 2h6dA was found.

Predicted Domain #2
Region A:
Residues: [288-401]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CENESSIVDI DVVQSVAEKF DVKEEDVTGA LLAEDHHHFL CIAYRLEVNH KRNADESSQK  60
   61 AMEDFWEIGK TMKMGSTSLP VGATTKTNVG RKILEGLKKE QKKLTWNLGI RACL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [402-589]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DPVETMKHVF LSLKSVDMEW KVLSMYHIIV RSKPTPINPD PVKVSLQLFA LDKKENNKGY  60
   61 LLDFKGLTED EEAVPPSRCR SRAASVSVTL AKSKSDLNGN SSKVPMSPLS PMSPISPSVN 120
  121 IPKVRVDDAD ASLKSSLNSS IYMADIENSM ESLDEVSTQS SEPEAPIRSQ TMEFFATCHI 180
  181 IMQALLAE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 12.522879
Match: 2v8qA
Description: No description for 2v8qA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle