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View Structure Prediction Details

Protein: tbc-11
Organism: Caenorhabditis elegans
Length: 571 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for tbc-11.

Description E-value Query
Range
Subject
Range
gi|114565462 - gi|114565462|ref|XP_514012.2| PREDICTED: hypothetical protein [Pan troglodytes]
357.0 [0..6] [559..665]

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Predicted Domain #1
Region A:
Residues: [1-117]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPTQLLHPTG DDESDCDEPL LSGSGKVSQE CKEEHLEMWD QLIENWDQQS DRPQKISELV  60
   61 LDGIPDKLRG RVWQLLSNAI DQPDLVEKYH IFLSQPCPSE QVIMRDIHRT FPAHDYF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 46.09691
Match: 2qq8A
Description: No description for 2qq8A was found.

Predicted Domain #2
Region A:
Residues: [118-571]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KESQGKGQQS LYKISKVYSL YDEEVSYCQG LSFLAASLLL HMPEEQAFCT LVKIMFNYGL  60
   61 RDLFKLGFDN LHLRFFQLTA LLKDYIPDLS HHLEHIGIET HMYASQWFLT LFTAKFPLQM 120
  121 VFFILDLFLS QGMNTIFHIS LALLDDAKTD LLQLDFEGTL KYFRVSLPRK YRTEASTKCL 180
  181 IHKAVKFRLN HSKLEVYENE YKRIKELERE NEDPVLRMEK EIGRHQANTL RLERENDDLA 240
  241 HELVTSKIEL RRKLDVAEDQ IETSANAIER LTRQNMDILE ENKNLMREYE QIKEMYRRDV 300
  301 LRLEENGSRA EKLLAEYKKL FSERSKRAEN EREHFEVQKK AIIARISDCD KCWPAVCEWE 360
  361 KNRSPVHSAS TPTGPDLLTK LEEREDHIKN LEIDLAQTKL SLVEAECRNQ DLTHQLMAQS 420
  421 ESDGKKWFKK TITQLKEVGS SLKHHERSNS SVTP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 35.522879
Match: 1i84S
Description: Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle