YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: dct-17
Organism: Caenorhabditis elegans
Length: 517 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for dct-17.

Description E-value Query
Range
Subject
Range
dct-17 - status:Confirmed UniProt:Q52GY1 protein_id:CAI91171.1
461.0 [0..1] [517..1]

Back

Predicted Domain #1
Region A:
Residues: [1-517]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSARFVAFLL ITSNLIILSK TDDDFTCPTI HITKDTGMTG AIPAGATSMT KIPAGTDCTY  60
   61 IFDIPKGFAI KMETSAVYDV SPGDSIKFDY FYISSPAEKE VEYAVNQTLP YEVISKTGNL 120
  121 TFFATYTYID MTNYQQVIKP TGTYFNATLE TDKYFTVQAA DNDQVVLKYG SRQTGFVDTS 180
  181 IYEVFVFDGN DILNSKYLGR LTELYRRPQY DVSSTSNTLT LLDLYGMPSD SLLLGNDAST 240
  241 VENMGQYSVF VIDSDKELDG YMGNYELEPD SWYTFICNDC SSFTIGAMTF DRKFENASGY 300
  301 IEVQGMSPTQ KLQPVLKYPY STNSNSSFPQ LIPSPMATFH IHNASVTFVV KPGVPQNDFA 360
  361 AAPGQSRSVY SPQIWNPAAE PKFDYTFSDP VKVYNFSINL QTVKLENDGD ELDVQVGSVD 420
  421 GLTTLDKKYN KDTKSDAYLS GIGRYLNLKY TGSKTSEVIL NFVMIDRLNP DGTTQSPGTT 480
  481 VVTGSTATSV HVETTTKGTS SLFSAGFLII VISALTL

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.43
Match: 1nt0A
Description: Mannose-binding protein associated serine protease 2, MASP2
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
receptor binding 0.451929262742742 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle