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View Structure Prediction Details

Protein: ced-4
Organism: Caenorhabditis elegans
Length: 571 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ced-4.

Description E-value Query
Range
Subject
Range
gi|37806183, gi|... - gi|50945691|ref|XP_482373.1| putative disease resistance protein [Oryza sativa (japonica cultivar-gr...
301.0 [0..6] [569..287]

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Predicted Domain #1
Region A:
Residues: [1-571]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLCEIECRAL STAHTRLIHD FEPRDALTYL EGKNIFTEDH SELISKMSTR LERIANFLRI  60
   61 YRRQASELGP LIDFFNYNNQ SHLADFLEDY IDFAINEPDL LRPVVIAPQF SRQMLDRKLL 120
  121 LGNVPKQMTC YIREYHVDRV IKKLDEMCDL DSFFLFLHGR AGSGKSVIAS QALSKSDQLI 180
  181 GINYDSIVWL KDSGTAPKST FDLFTDILLM LARVVSDTDD SHSITDFINR VLSRSEDDLL 240
  241 NFPSVEHVTS VVLKRMICNA LIDRPNTLFV FDDVVQEETI RWAQELRLRC LVTTRDVEIS 300
  301 NAASQTCEFI EVTSLEIDEC YDFLEAYGMP MPVGEKEEDV LNKTIELSSG NPATLMMFFK 360
  361 SCEPKTFEKM AQLNNKLESR GLVGVECITP YSYKSLAMAL QRCVEVLSDE DRSALAFAVV 420
  421 MPPGVDIPVK LWSCVIPVDI CSNEEEQLDD EVADRLKRLS KRGALLSGKR MPVLTFKIDH 480
  481 IIHMFLKHVV DAQTIANGIS ILEQRLLEIG NNNVSVPERH IPSHFQKFRR SSASEMYPKT 540
  541 TEETVIRPED FPKFMQLHQK FYDSLKNFAC C

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 52.30103
Match: 2a5yB
Description: Structure of a CED-4/CED-9 complex
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle