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View Structure Prediction Details

Protein: fbxa-108
Organism: Caenorhabditis elegans
Length: 319 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for fbxa-108.

Description E-value Query
Range
Subject
Range
fbxa-107 - status:Partially_confirmed UniProt:Q9U2P1 protein_id:CAB60569.1
227.0 [0..1] [319..1]

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Predicted Domain #1
Region A:
Residues: [1-319]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADDLDEKVI SLKISKAPSM SNMPLDIIHK MVENVKPIDR LSLRKVCRNF REIVNDKDPG  60
   61 FKRLRLDLFK DLFSFVLHDA KNVAITQDFD GQTCTVQFNH REKRCFTKNA LKIALNDVTV 120
  121 LIENPHFQLS HFNFSALDED TAAVETVMSW FKSVSDSKKL WKVEKITLEA CNCDIPGILS 180
  181 GFQPGILRSI KILHHLDLST LEEIFRLEQW KMAKSADIIS SEHSSFPIEN LVHLSNFYLE 240
  241 LDYFTVADAV KIRDILLKTA NFNSGTISVL DFYDFIIDIL HVFDPNYNFV EDEVFYNDGE 300
  301 GAQFLITHND YELMIKRVL

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.2
Match: 1fs2A
Description: Skp2; Cyclin A/CDK2-associated p19, Skp2
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle