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View Structure Prediction Details

Protein: CE39506
Organism: Caenorhabditis elegans
Length: 248 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE39506.

Description E-value Query
Range
Subject
Range
gi|187030455, gi... - gi|39590323|emb|CAE66062.1| Hypothetical protein CBG11275 [Caenorhabditis briggsae], gi|187030455|em...
gi|157760038 - gi|157760038|ref|XP_001672361.1| Hypothetical protein CBG11275 [Caenorhabditis briggsae AF16]
307.0 [0..1] [248..1]

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Predicted Domain #1
Region A:
Residues: [1-248]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFLLLLFPV LLLAKSPEKR SKVGIDEDNF LQLLEVEIAR TLRSELSSDD DLQNLEGSSD  60
   61 SPEDDYLKKY DLILSSSTTS PKPITTTETT TRSTTTTTTT TTTTAAPSTT TSTVKITPKP 120
  121 LRSTPQCVPE KDCYKDSECP SGKCFGSELG LCDCNACITN KKCSSDLDCG GLRNGCDSNG 180
  181 NCDCVNAFHS HGYKLFVKVL LTFCHQTKCT KTSDNCYGLP CRVGKCKCFV GSGVGSKLPV 240
  241 HYFKPAGK

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.58
Match: 2gy5A
Description: No description for 2gy5A was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle