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View Structure Prediction Details

Protein: CE39439
Organism: Caenorhabditis elegans
Length: 138 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE39439.

Description E-value Query
Range
Subject
Range
gi|48374972 - gi|48374972|gb|AAT42170.1| putative actin depolymerizing factor [Sorghum bicolor]
170.0 [0..1] [137..325]

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Predicted Domain #1
Region A:
Residues: [1-138]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSSLTICSI PDGVKEDLKK FRFSKSTTMN ALILKIDRES HELQSEQLLN DCSIEEFKEE  60
   61 LPSQQPRFIL LSWCKKHSDE RISYPMLLIY YCPNGSSPEL QMLYAGSRNF IVNECHVSKN 120
  121 TEIRDIDEID DELLESKF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 35.0
Match: 1vkkA
Description: Crystal structure of Glia maturation factor-gamma (GMFG) from Mus musculus at 1.50 A resolution
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle