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View Structure Prediction Details

Protein: syp-3
Organism: Caenorhabditis elegans
Length: 224 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for syp-3.

Description E-value Query
Range
Subject
Range
gi|68388302 - gi|68388302|ref|XP_696268.1| PREDICTED: similar to slow myosin heavy chain 1 [Danio rerio]
141.0 [0..14] [222..1980]

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Predicted Domain #1
Region A:
Residues: [1-224]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNFEKLVSQA VNGDRFKIFC GQLTEFTNSL AGEREAIEKG MRQIETQQLE AETSFTERIA  60
   61 EDRVKCAAQR ESLERQLQDL TATDNKLSEQ KRDWEERQEK AYDELMSYLE NEDVDSAGTQ 120
  121 FGDHFNSLIK SMNNLSHDSM NGQFNSLKNN LDELNIEKKQ LEVAIADQSS TISEMIPSLR 180
  181 PTCGATYKER NTLRIIFHYQ VAKLRSEYQK CRLQEEALKA RLST

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 14.30103
Match: 1i84S
Description: Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle