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View Structure Prediction Details

Protein: CE39100
Organism: Caenorhabditis elegans
Length: 390 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE39100.

Description E-value Query
Range
Subject
Range
gi|7503581 - gi|7503581|pir||T25769 hypothetical protein F46F11.8 - Caenorhabditis elegans
351.0 [0..1] [384..359]

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Predicted Domain #1
Region A:
Residues: [1-160]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEQLSNKFQL LQWNFRRLLN IPQKTVSPVV WRPPMITSSH EPSSEFRENL SEEENKRIDR  60
   61 ILEELFLFSR LSVRFPKKIS DSEWKTFLEL KSRKSRFDEA MFLFRKEKLE EEDARKKLEK 120
  121 VNFRKISEQN VGSRVPSYML HFPNSVSEEY YQMKRLYEAY 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [161-390]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LLENRPILAV DCQFLSRLSP RGRGLTALQL QYLITENRRN PDPFRLHFVN YDSKNSSIQD  60
   61 LEKSKLQSIR KSHVFNPIVT ENGLETYENH SKNVIYLSPD ATEELESVDD DKIYVIGGIV 120
  121 DRVPEPGIPK HASLEASQSA GVFARKLPID RYVDFKSGSK FLTLLAVAEI LRQVNIHGDW 180
  181 KKAMKVAIPV RNTRGADEKN PKARAAQLRI HAFNQEILKR IDRRLGKDFI 

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 60.113509
Match: PF01746.12
Description: No description for PF01746.12 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle