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View Structure Prediction Details

Protein: lpd-5
Organism: Caenorhabditis elegans
Length: 176 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for lpd-5.

Description E-value Query
Range
Subject
Range
gi|187040638, gi... - gi|39579614|emb|CAE56281.1| Hypothetical protein CBG23930 [Caenorhabditis briggsae], gi|187040638|em...
260.0 [0..1] [176..1]

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Predicted Domain #1
Region A:
Residues: [1-176]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRAGASRCL SAGNTAFRCL STGKDNLPVT RSHDAKKVEL NDILDKPSQK TPVKVSSDET  60
   61 MDIGGVPLDH QDARTARIFR PARETTQSAW GNTKSWTIEL DNRQRWENPL MGWSGTADPL 120
  121 SNVGMDLKFA TKEDAIAFCE KNRWEFDVEE PHERKIKPKN YGQNFSWNRR TRIGTK

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 68.309804
Match: PF04800.3
Description: No description for PF04800.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle