YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24115209, gi\|...
Organism:	Shigella flexneri 2a str. 301
Length:	167 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24115209, gi|....

Description	E-value	Query Range	Subject Range
gi\|83569820 - gi\|83569820\|ref\|ZP_00921269.1\| COG3678: P pilus assembly/Cpx signaling pathway, periplasmic inhibito...	145.0	[0..1]	[167..1]
gi\|226902882, gi... - gi\|237702945\|ref\|ZP_04533426.1\| periplasmic repressor CpxP [Escherichia sp. 3_2_53FAA], gi\|226902882... gi\|91213454, gi\|... - gi\|91213454\|ref\|YP_543440.1\| hypothetical protein UTI89_C4497 [Escherichia coli UTI89], gi\|91075028\|... gi\|115515305, gi... - gi\|117626181\|ref\|YP_859504.1\| periplasmic repressor CpxP [Escherichia coli APEC O1], gi\|115515305\|gb...	142.0	[0..1]	[152..1]
gi\|83586242, gi\|... - gi\|83586242\|ref\|ZP_00924878.1\| COG3678: P pilus assembly/Cpx signaling pathway, periplasmic inhibito...	142.0	[0..1]	[152..1]
EG11872 - inhibitor of the cpx response; periplasmic adaptor protein / Inhibitor of the cpx response; periplas... gi\|161367475 - gi\|161367475\|ref\|NP_290543.2\| periplasmic repressor CpxP [Escherichia coli O157:H7 EDL933] gi\|188487283, gi... - gi\|188492084\|ref\|ZP_02999354.1\| conserved hypothetical protein [Escherichia coli 53638], gi\|18848728... gi\|170083384, gi... - gi\|170083384\|ref\|YP_001732704.1\| periplasmic protein combats stress [Escherichia coli str. K-12 subs... gi\|195937555 - gi\|195937555\|ref\|ZP_03082937.1\| periplasmic repressor CpxP [Escherichia coli O157:H7 str. EC4024] gi\|193063997, gi... - gi\|193063997\|ref\|ZP_03045083.1\| periplasmic protein CpxP [Escherichia coli E22], gi\|192929462\|gb\|EDV... CPXP_SHIFL - Periplasmic protein CpxP OS=Shigella flexneri GN=cpxP PE=3 SV=1 gi\|209397775, gi... - gi\|209397775\|ref\|YP_002273431.1\| periplasmic protein CpxP [Escherichia coli O157:H7 str. EC4115], gi... EG11872 - inhibitor of the cpx response; periplasmic adaptor protein / Inhibitor of the cpx response; periplas... gi\|208741696, gi... - gi\|208821573\|ref\|ZP_03261893.1\| periplasmic protein CpxP [Escherichia coli O157:H7 str. EC4042], gi\|... gi\|215267317, gi... - gi\|215489245\|ref\|YP_002331676.1\| periplasmic repressor CpxP [Escherichia coli O127:H6 str. E2348/69]... gi\|209921393, gi... - gi\|209921393\|ref\|YP_002295477.1\| periplasmic repressor CpxP [Escherichia coli SE11], gi\|209914652\|db... CPXP_ECOL6 - Periplasmic protein CpxP OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=cpxP PE=3... gi\|161485828 - gi\|161485828\|ref\|NP_709719.3\| periplasmic repressor CpxP [Shigella flexneri 2a str. 301] gi\|161950015 - gi\|161950015\|ref\|YP_405268.2\| periplasmic repressor CpxP [Shigella dysenteriae Sd197] gi\|161486410 - gi\|161486410\|ref\|NP_838963.2\| periplasmic repressor CpxP [Shigella flexneri 2a str. 2457T] gi\|161986403 - gi\|161986403\|ref\|YP_312833.2\| periplasmic repressor CpxP [Shigella sonnei Ss046] gi\|161984811 - gi\|161984811\|ref\|YP_410210.2\| periplasmic repressor CpxP [Shigella boydii Sb227] gi\|169757003, gi... - gi\|170022075\|ref\|YP_001727029.1\| periplasmic repressor CpxP [Escherichia coli ATCC 8739], gi\|1697570... gi\|162139737 - gi\|162139737\|ref\|NP_312866.2\| periplasmic repressor CpxP [Escherichia coli O157:H7 str. Sakai] gi\|218429762, gi... - gi\|218692198\|ref\|YP_002400410.1\| periplasmic repressor CpxP [Escherichia coli ED1a], gi\|218429762\|em... gi\|218363245, gi... - gi\|218556476\|ref\|YP_002389390.1\| periplasmic repressor CpxP [Escherichia coli IAI1], gi\|218363245\|em... CPXP_ECOL6 - Periplasmic protein CpxP OS=Escherichia coli O6 GN=cpxP PE=3 SV=1 gi\|218701383, gi... - gi\|218701383\|ref\|YP_002409012.1\| periplasmic repressor CpxP [Escherichia coli IAI39], gi\|218371369\|e... gi\|89110115, gi\|... - gi\|89110115\|ref\|AP_003895.1\| periplasmic protein combats stress [Escherichia coli str. K-12 substr. ... gi\|218354360, gi... - gi\|218697628\|ref\|YP_002405295.1\| periplasmic repressor CpxP [Escherichia coli 55989], gi\|218354360\|e... gi\|75238357 - gi\|75238357\|ref\|ZP_00722356.1\| COG3678: P pilus assembly/Cpx signaling pathway, periplasmic inhibito... gi\|75230435 - gi\|75230435\|ref\|ZP_00716921.1\| COG3678: P pilus assembly/Cpx signaling pathway, periplasmic inhibito... gi\|218434635, gi... - gi\|218707538\|ref\|YP_002415057.1\| periplasmic repressor CpxP [Escherichia coli UMN026], gi\|218434635\|... gi\|75197786, gi\|... - gi\|75197786\|ref\|ZP_00707856.1\| COG3678: P pilus assembly/Cpx signaling pathway, periplasmic inhibito... gi\|75188649, gi\|... - gi\|75188649\|ref\|ZP_00701916.1\| COG3678: P pilus assembly/Cpx signaling pathway, periplasmic inhibito... gi\|110807396, gi... - gi\|110807396\|ref\|YP_690916.1\| periplasmic repressor CpxP [Shigella flexneri 5 str. 8401], gi\|1106169... gi\|238862008, gi... - gi\|238902980\|ref\|YP_002928776.1\| periplasmic protein combats stress [Escherichia coli BW2952], gi\|23... CPXP_ECOLI - Periplasmic protein cpxP precursor - Escherichia coli gi\|254595313, gi... - gi\|254795913\|ref\|YP_003080750.1\| periplasmic protein combats stress [Escherichia coli O157:H7 str. T... gi\|124501277, gi... - gi\|124527575\|ref\|ZP_01699040.1\| protein of unknown function, Spy-related [Escherichia coli B], gi\|12...	142.0	[0..2]	[152..1]
gi\|75240307 - gi\|75240307\|ref\|ZP_00724247.1\| COG3678: P pilus assembly/Cpx signaling pathway, periplasmic inhibito... gi\|110345842, gi... - gi\|110644250\|ref\|YP_671980.1\| periplasmic repressor CpxP [Escherichia coli 536], gi\|110345842\|gb\|ABG...	140.0	[0..2]	[152..1]
gi\|75176701 - gi\|75176701\|ref\|ZP_00696829.1\| COG3678: P pilus assembly/Cpx signaling pathway, periplasmic inhibito...	136.0	[0..1]	[152..1]
gi\|213648767 - gi\|213648767\|ref\|ZP_03378820.1\| periplasmic repressor CpxP [Salmonella enterica subsp. enterica sero... gi\|213855177 - gi\|213855177\|ref\|ZP_03383417.1\| periplasmic repressor CpxP [Salmonella enterica subsp. enterica sero... gi\|214001104 - gi\|214001104\|ref\|ZP_03411839.1\| periplasmic repressor CpxP [Salmonella enterica subsp. enterica sero... gi\|213029212 - gi\|213029212\|ref\|ZP_03343659.1\| periplasmic repressor CpxP [Salmonella enterica subsp. enterica sero... gi\|25380133, gi\|... - gi\|25380133\|pir\|\|AB0943 extracytoplasmic stress protein for protein-mediated toxicities [imported] -... gi\|213052747 - gi\|213052747\|ref\|ZP_03345625.1\| periplasmic repressor CpxP [Salmonella enterica subsp. enterica sero... gi\|213417373 - gi\|213417373\|ref\|ZP_03350515.1\| periplasmic repressor CpxP [Salmonella enterica subsp. enterica sero... gi\|213620676 - gi\|213620676\|ref\|ZP_03373459.1\| periplasmic repressor CpxP [Salmonella enterica subsp. enterica sero... gi\|29139498, gi\|... - gi\|29143862\|ref\|NP_807204.1\| periplasmic repressor CpxP [Salmonella enterica subsp. enterica serovar... gi\|16762374 - gi\|16762374\|ref\|NP_457991.1\| periplasmic repressor CpxP [Salmonella enterica subsp. enterica serovar...	135.0	[0..2]	[152..1]
gi\|205274143, gi... - gi\|205354362\|ref\|YP_002228163.1\| periplasmic repressor CpxP [Salmonella enterica subsp. enterica ser... gi\|207859248, gi... - gi\|207859248\|ref\|YP_002245899.1\| periplasmic repressor CpxP [Salmonella enterica subsp. enterica ser... gi\|199604699, gi... - gi\|200387601\|ref\|ZP_03214213.1\| periplasmic repressor [Salmonella enterica subsp. enterica serovar V... gi\|204930236, gi... - gi\|204930236\|ref\|ZP_03221213.1\| periplasmic repressor [Salmonella enterica subsp. enterica serovar J... gi\|197364835, gi... - gi\|197364835\|ref\|YP_002144472.1\| periplasmic repressor CpxP [Salmonella enterica subsp. enterica ser... gi\|197937688, gi... - gi\|198243172\|ref\|YP_002217987.1\| periplasmic repressor [Salmonella enterica subsp. enterica serovar ... gi\|197214649, gi... - gi\|197250946\|ref\|YP_002148991.1\| periplasmic repressor [Salmonella enterica subsp. enterica serovar ... gi\|197263835, gi... - gi\|197263835\|ref\|ZP_03163909.1\| periplasmic repressor [Salmonella enterica subsp. enterica serovar S... gi\|194410073, gi... - gi\|194451769\|ref\|YP_002048064.1\| periplasmic repressor CpxP [Salmonella enterica subsp. enterica ser... gi\|16422625, gi\|... - gi\|16767326\|ref\|NP_462941.1\| periplasmic repressor CpxP [Salmonella typhimurium LT2], gi\|16422625\|gb... gi\|194469124, gi... - gi\|194469124\|ref\|ZP_03075108.1\| periplasmic repressor [Salmonella enterica subsp. enterica serovar K... gi\|168821592, gi... - gi\|205341893\|gb\|EDZ28657.1\| periplasmic repressor [Salmonella enterica subsp. enterica serovar Welte... gi\|194404921, gi... - gi\|194446258\|ref\|YP_002043285.1\| periplasmic repressor [Salmonella enterica subsp. enterica serovar ... gi\|168263039, gi... - gi\|205348071\|gb\|EDZ34702.1\| periplasmic repressor [Salmonella enterica subsp. enterica serovar Hadar... gi\|195630141, gi... - gi\|195630141\|gb\|EDX48781.1\| periplasmic repressor [Salmonella enterica subsp. enterica serovar Newpo... gi\|205332786, gi... - gi\|205332786\|gb\|EDZ19550.1\| periplasmic repressor [Salmonella enterica subsp. enterica serovar Kentu... gi\|168244187, gi... - gi\|205336910\|gb\|EDZ23674.1\| periplasmic repressor [Salmonella enterica subsp. enterica serovar Heide... gi\|167991592, gi... - gi\|205330003\|gb\|EDZ16767.1\| periplasmic repressor [Salmonella enterica subsp. enterica serovar 4,[5]... gi\|238912205 - gi\|238912205\|ref\|ZP_04656042.1\| periplasmic repressor CpxP [Salmonella enterica subsp. enterica sero... gi\|62182521, gi\|... - gi\|62182521\|ref\|YP_218938.1\| periplasmic repressor CpxP [Salmonella enterica subsp. enterica serovar... lcl\|NC_016856.1_... - [gene=cpxP] [protein=repressor CpxP] [protein_id=YP_005240336.1] [location=4284179..4284679] gi\|224585873, gi... - gi\|224585873\|ref\|YP_002639672.1\| extracytoplasmic stress protein for protein-mediated toxicities [Sa... gi\|56130163, gi\|... - gi\|56415906\|ref\|YP_152981.1\| periplasmic repressor CpxP [Salmonella enterica subsp. enterica serovar...	134.0	[0..2]	[152..1]
gi\|37528606, gi\|... - gi\|37528606\|ref\|NP_931951.1\| periplasmic protein precursor [Photorhabdus luminescens subsp. laumondi...	127.0	[0..2]	[144..1]
gi\|25380129 - pir\|\|AC0010 probable exported protein cpxP [imported] - Yersinia pestis (strain CO92) gi\|162420508, gi... - gi\|77633895\|ref\|ZP_00796008.1\| COG3678: P pilus assembly/Cpx signaling pathway, periplasmic inhibito... gi\|229904465, gi... - gi\|229904465\|ref\|ZP_04519576.1\| P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc- ... gi\|149290271, gi... - gi\|150260863\|ref\|ZP_01917591.1\| putative exported protein [Yersinia pestis CA88-4125], gi\|149290271\|... gi\|153950411, gi... - gi\|77630849\|ref\|ZP_00793435.1\| COG3678: P pilus assembly/Cpx signaling pathway, periplasmic inhibito... gi\|22123987, gi\|... - gi\|22123987\|ref\|NP_667410.1\| periplasmic stress adaptor protein CpxP [Yersinia pestis KIM], gi\|21956... gi\|27544275 - gi\|27544275\|dbj\|BAC54910.1\| hypothetical protein [Yersinia pseudotuberculosis] gi\|229706636, gi... - gi\|229836188\|ref\|ZP_04456356.1\| P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc- ... gi\|218927294, gi... - gi\|218927294\|ref\|YP_002345169.1\| periplasmic stress adaptor protein CpxP [Yersinia pestis CO92], gi\|... gi\|229839924, gi... - gi\|229839924\|ref\|ZP_04460083.1\| P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc- ... gi\|45439939, gi\|... - gi\|45439939\|ref\|NP_991478.1\| periplasmic stress adaptor protein CpxP [Yersinia pestis biovar Microtu... gi\|229842006, gi... - gi\|229842006\|ref\|ZP_04462161.1\| P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc- ... gi\|165936156, gi... - gi\|89103446\|ref\|ZP_01176023.1\| COG3678: P pilus assembly/Cpx signaling pathway, periplasmic inhibito... gi\|108809459, gi... - gi\|108809459\|ref\|YP_653375.1\| periplasmic stress adaptor protein CpxP [Yersinia pestis Antiqua], gi\|... gi\|165989621, gi... - gi\|166011475\|ref\|ZP_02232373.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|165926138, gi... - gi\|165926138\|ref\|ZP_02221970.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... gi\|167398953, gi... - gi\|167398953\|ref\|ZP_02304477.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|166213737, gi... - gi\|166213737\|ref\|ZP_02239772.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|167054373, gi... - gi\|167426684\|ref\|ZP_02318437.1\| conserved hypothetical protein [Yersinia pestis biovar Mediaevalis s... gi\|167419212, gi... - gi\|167419212\|ref\|ZP_02310965.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... gi\|170026338, gi... - gi\|170026338\|ref\|YP_001722843.1\| periplasmic stress adaptor protein CpxP [Yersinia pseudotuberculosi... gi\|167468393 - gi\|167468393\|ref\|ZP_02333097.1\| hypothetical protein YpesF_10944 [Yersinia pestis FV-1]	127.0	[0..2]	[157..1]

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Predicted Domain #1

Region A:
Residues: [1-167]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMRIVTAAVM ASTLAVSSLS HAAEVGSGDN WHPGEELTQR STQSHMFDGI SLTEHQRQQM  60
   61 RDLMQQARHE QPPVNVSELE TMHRLVTAEN FDENAVRAQA EKMANEQIAR QVEMAKVRNQ 120
  121 MYRLLTPEQQ AVLNEKHQQR MEQLRDVTQW QKSSSLKLLS SSNSRSQ

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	0.973
Match:	1m1jC
Description:	Fibrinogen C-terminal domains; Fibrinogen gamma chain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits