YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CCB24_ARATH
Organism: Arabidopsis thaliana
Length: 431 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CCB24_ARATH.

Description E-value Query
Range
Subject
Range
gi|25294186, gi|... - gi|6554487|gb|AAF16669.1|AC012394_18 putative G2/mitotic-specific cyclin 1 (B-like cyclin); 75390-77...
380.0 [0..20] [431..7]
CCNB1_SOYBN - G2/mitotic-specific cyclin S13-6 OS=Glycine max PE=2 SV=1
331.0 [0..1] [430..1]
gi|114599953 - gi|114599953|ref|XP_517728.2| PREDICTED: cyclin B1 [Pan troglodytes]
326.0 [0..1] [428..104]
gi|7438501, gi|4... - pir||T10526 cyclin B1c-ll - yellow lupine, gi|4884728|gb|AAD31790.1|AF126107_1 mitotic cyclin B1-3 [...
324.0 [0..20] [430..21]
gi|1835260 - gi|1835260|emb|CAA99990.1| mitotic cyclin [Sesbania rostrata]
324.0 [0..13] [430..12]
gi|1362054 - pir||S56679 mitosis-specific cyclin CycIII - alfalfa
gi|780267 - gi|780267|emb|CAA55272.1| B-like cyclin [Medicago sativa subsp. x varia]
319.0 [0..1] [430..1]
CCNB1, CGB1 - chorionic gonadotropin, beta polypeptide 1, cyclin B1
gi|123990181 - gi|123990181|gb|ABM83901.1| cyclin B1 [synthetic construct]
318.0 [0..1] [428..1]

Back

Predicted Domain #1
Region A:
Residues: [1-79]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGGSDENRHG VIGPMNRQQG GLRGGKVIPT NGQTRRALSN INKNIIGAPV YPCAVKRPFT  60
   61 EKNGICNKKI PPVPVHRPV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [80-175]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TRKFAAQLAE NNLQIHKEET KKPDLISNEA LDRIITDVEE GDFNEPMFVQ HTEAMLEEID  60
   61 KMEGIEMQDS NDIDAEVEES VMDIDSCDKN NPLSVV

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [176-431]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EYINDIYCFY KKNECRSCVP PNYMENQHDI NERMRGILFD WLIEVHYKFE LMEETLYLTI  60
   61 NLIDRFLAVH QHIARKKLQL VGVTAMLLAC KYEEVSVPVV DDLILISDKA YTRTEILDME 120
  121 KLMANTLQFN FCLPTPYVFM RRFLKAAQSD KKLELLSFFM IELCLVEYEM LQYTPSQLAA 180
  181 SAIYTAQSTL KGYEDWSKTS EFHSGYTEEA LLECSRKMVG LHHKAGTGKL TGVHRKYNTS 240
  241 KFGYAARIEP AGFLLL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 65.39794
Match: 2jgzB
Description: No description for 2jgzB was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle