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View Structure Prediction Details

Protein: RH49_ARATH
Organism: Arabidopsis thaliana
Length: 558 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RH49_ARATH.

Description E-value Query
Range
Subject
Range
gi|26451630 - gi|26451630|dbj|BAC42912.1| putative ATP-dependent RNA helicase [Arabidopsis thaliana]
392.0 [0..1] [558..1]

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Predicted Domain #1
Region A:
Residues: [1-390]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSSPPKTIT KALPRFSELK PPLSEDIIEA LDRSGFEVCT PVQAETIPFL CSHKDVVVDA  60
   61 ATGSGKTLAF LLPFIEIIRR SNSYPPKPHQ VMGVIISPTR ELSAQIHKVA EPFVSTLPNV 120
  121 NSVLLVGGRE VEADMNTLEE EGANLLIGTP GRLSDMMKRM EFLDFRNLEI LILDEADRLL 180
  181 DMGFQKQVNY IISRLPKQRR TGLFSATQTQ AVADLAKAGL RNAMEVISGA ESKSKTSSGL 240
  241 YCEYLKCEAD QKSSQLVHLL IENKNKKLVV FFMTCACVDY WGLVLSKIPT LKSISFFSTH 300
  301 GKMDQKGRDT ALASFTEASS GVLLCTDVAA RGLDIPGIDY VVQYDPPQDP DVFIHRVGRT 360
  361 ARMERQGRAI VFLMPKETDY VEFMRIRRVP 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 75.522879
Match: 2i4iA
Description: No description for 2i4iA was found.

Predicted Domain #2
Region A:
Residues: [391-558]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LQERKCSENA SDVIPIIRSL AIKDRAVLEK GLQAFVSFVR AYKEHHCSYI FSWKGLEIGK  60
   61 LAMGYGILSF PYISEVKQDR IGIVGFTPVQ GITFEDIKYK NKSREKQRQQ NLLARKDKLQ 120
  121 QEKRGKRKKS SKEAVDDSNK ASRKRKLTGR QRQTIQTAQD EEEMNLRL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 3.39794
Match: 1tf2A
Description: Crystal structure of SecA:ADP in an open conformation from Bacillus Subtilis
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle