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View Structure Prediction Details

Protein: RH39_ARATH
Organism: Arabidopsis thaliana
Length: 621 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RH39_ARATH.

Description E-value Query
Range
Subject
Range
gi|51968848 - gi|51968848|dbj|BAD43116.1| unnamed protein product [Arabidopsis thaliana]
400.0 [0..1] [621..1]

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Predicted Domain #1
Region A:
Residues: [1-111]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVGASRTILS LSLSSSLFTF SKIPHVFPFL RLHKPRFHHA FRPLYSAAAT TSSPTTETNV  60
   61 TDPDQLKHTI LLERLRLRHL KESAKPPQQR PSSVVGVEEE SSIRKKSKKL V

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [112-498]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ENFQELGLSE EVMGALQELN IEVPTEIQCI GIPAVMERKS VVLGSHTGSG KTLAYLLPIV  60
   61 QLMREDEANL GKKTKPRRPR TVVLCPTREL SEQVYRVAKS ISHHARFRSI LVSGGSRIRP 120
  121 QEDSLNNAID MVVGTPGRIL QHIEEGNMVY GDIAYLVLDE ADTMFDRGFG PEIRKFLAPL 180
  181 NQRALKTNDQ GFQTVLVTAT MTMAVQKLVD EEFQGIEHLR TSTLHKKIAN ARHDFIKLSG 240
  241 GEDKLEALLQ VLEPSLAKGS KVMVFCNTLN SSRAVDHYLS ENQISTVNYH GEVPAEQRVE 300
  301 NLKKFKDEEG DCPTLVCTDL AARGLDLDVD HVVMFDFPKN SIDYLHRTGR TARMGAKGKV 360
  361 TSLVSRKDQM LAARIEEAMR NNESLES

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 92.39794
Match: 2i4iA
Description: No description for 2i4iA was found.

Predicted Domain #3
Region A:
Residues: [499-621]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LTTDNVRRDA ARTHITQEKG RSVKQIREVS KQRNSRDKPS SSSPPARSTG GKTPVRKSSS  60
   61 SSFSKPRKAS SPPEKSSKPK RKILKTVGSR SIAARGKTGS DRRPGKKLSV VGFRGKSSSA 120
  121 RAS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 18.221849
Match: 1d2mA
Description: Nucleotide excision repair enzyme UvrB
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle