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View Structure Prediction Details

Protein: OCT7_ARATH
Organism: Arabidopsis thaliana
Length: 500 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for OCT7_ARATH.

Description E-value Query
Range
Subject
Range
gi|49527412 - gi|49527412|emb|CAG61052.1| unnamed protein product [Candida glabrata]
gi|50291337, gi|... - gi|50291337|ref|XP_448101.1| unnamed protein product [Candida glabrata], gi|49527412|emb|CAG61052.1|...
279.0 [0..1] [496..97]

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Predicted Domain #1
Region A:
Residues: [1-500]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADGNTRFTV DEALVAMGFG KFQIYVLAYA GMGWVAEAME MMLLSFVGPA VQSLWNLSAR  60
   61 QESLITSVVF AGMLIGAYSW GIVSDKHGRR KGFIITAVVT FVAGFLSAFS PNYMWLIILR 120
  121 CLVGLGLGGG PVLASWYLEF IPAPSRGTWM VVFSAFWTVG TIFEASLAWL VMPRLGWRWL 180
  181 LAFSSVPSSL LLLFYRWTSE SPRYLILQGR KAEALAILEK IARMNKTQLP PGVLSSELET 240
  241 ELEENKNIPT ENTHLLKAGE SGEAVAVSKI VLKADKEPGF SLLALLSPTL MKRTLLLWVV 300
  301 FFGNAFAYYG VVLLTTELNN SHNRCYPTEK QLRNSNDVNY RDVFIASFAE FPGLLISAAM 360
  361 VDRLGRKASM ASMLFTCCIF LLPLLSHQSP FITTVLLFGG RICISAAFTV VYIYAPEIYP 420
  421 TAVRTTGVGV GSSVGRIGGI LCPLVAVGLV HGCHQTIAVL LFEVVILVSG ICVCLFPFET 480
  481 SGRDLTDSIS ASKEPPSASV 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 12.0
Match: 1pw4A
Description: Crystal Structure of the Glycerol-3-Phosphate Transporter from E.Coli
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
transporter activity 2.54286095434601 bayes_pls_golite062009
transmembrane transporter activity 2.01247278444729 bayes_pls_golite062009
substrate-specific transporter activity 1.77039368764865 bayes_pls_golite062009
substrate-specific transmembrane transporter activity 1.66673693200184 bayes_pls_golite062009
active transmembrane transporter activity 0.33203350453105 bayes_pls_golite062009
polyol transmembrane transporter activity 0.24475883286552 bayes_pls_golite062009
alcohol transmembrane transporter activity 0.24475883286552 bayes_pls_golite062009
glycerol transmembrane transporter activity 0.2309068592963 bayes_pls_golite062009
ion transmembrane transporter activity 0.18188709249385 bayes_pls_golite062009
binding 0.105551689569449 bayes_pls_golite062009
glycerol-3-phosphate transmembrane transporter activity 1.26964387230144E-4 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle