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View Structure Prediction Details

Protein: SWC4_ARATH
Organism: Arabidopsis thaliana
Length: 441 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for SWC4_ARATH.

Predicted Domain #1
Region A:
Residues: [1-194]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGGTDAKDIL GLPKTPLSLT QEKKSRPQKE SHRKPDGISR EVYALTGGVA PLMPSIDLKR  60
   61 RPPADEKVAW KWLSFTNSAR KDDLQLYHWV RVVNDVPPTG DYSFAKYNKS VDILKYTDEE 120
  121 YENHLTDSVW TKEETDQLFE FCQNFDLRFV VIADRFPVSR TVEELKDRYY SVNRALLRAR 180
  181 AQSPADVANH PLMK

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.5
Match: 1a5jA
Description: CHICKEN B-MYB DNA BINDING DOMAIN, REPEAT 2 AND REPEAT3, NMR, 32 STRUCTURES
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.578 a.100.1 6-phosphogluconate dehydrogenase C-terminal domain-like
View Download 0.556 a.24.13 Domain of the SRP/SRP receptor G-proteins
View Download 0.554 a.100.1 6-phosphogluconate dehydrogenase C-terminal domain-like


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle