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View Structure Prediction Details

Protein: gi|59958328, gi|...
Organism: Arabidopsis thaliana
Length: 547 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|59958328, gi|....

Description E-value Query
Range
Subject
Range
gi|18377847 - gi|18377847|gb|AAL67110.1| At2g5740/F3N11.19 [Arabidopsis thaliana]
541.0 [0..1] [547..1]

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Predicted Domain #1
Region A:
Residues: [1-93]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDDERIRERE RLQIEQIREL DFEELQVEEV DDLHDSDSDD NNDDLSSFPF SSHAQASGNL  60
   61 GDDELMFNPA LASLHMYLGE VEDTQNRVSF VDG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [94-277]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GTVLKIPLFY LEGVVLFPEA TLPLRIIQPS FLAAVERALN QANAPSTIGV IRVYREGAQF  60
   61 KYASVGTTAE IRQYRRLGDG SFNVITRGQQ RFRLKHRWTD VEGFTCGEVQ IVDEDVPLRT 120
  121 PRDAFGKLVP LSKLRGRYPL GTASLSTPLR DMDAQSEANS EESFESALSP SEKRLHYSVV 180
  181 DSIF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 22.69897
Match: 1zboA
Description: Crystal Structure of the Hypothetical Protein BPP1347 from Bordetella parapertussis, Northeast Structural Genomics Target BoR27.
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [278-471]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CNSTSSDDDQ VVSTSTVQSS GSNPYSLRSI GCLASSHDNE NEDEQSAIGK TPVSQEKYQK  60
   61 QNRLASFRQN TDLSRFRMTP RAFWPFWAYR MFDSYYLAQR AVDLWKQIVG VPNMEAFVNK 120
  121 PDILSFSIAS KIPVSESIRQ ELLELDGVSY RLQREIELLE SFDRVRCIHC QTVIARRKDM 180
  181 LVMSNEGPLG AYVN

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 2.6
Match: 1zboA
Description: Crystal Structure of the Hypothetical Protein BPP1347 from Bordetella parapertussis, Northeast Structural Genomics Target BoR27.
Matching Structure (courtesy of the PDB):

Predicted Domain #4
Region A:
Residues: [472-547]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PHGYVHEIMT FYKANDIALR GRPVKKDSWF PGYAWTIANC ATCETQLGWH FTATNKKLKP  60
   61 SSFWAVRGSQ VADDMR

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle