YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|55627156, gi\|...
Organism:	Pan troglodytes
Length:	275 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|55627156, gi|....

Description	E-value	Query Range	Subject Range
gi\|73973666 - gi\|73973666\|ref\|XP_854294.1\| PREDICTED: similar to Autophagy protein 5-like (APG5-like) (Apoptosis-s...	0.0	[1..275]	[1..275]
ATG5_PONPY - Autophagy protein 5 - Pongo pygmaeus (Orangutan) ATG5_PONAB - Autophagy protein 5 OS=Pongo abelii GN=ATG5 PE=2 SV=1	0.0	[1..275]	[1..275]
ATG5_MOUSE - Autophagy protein 5 OS=Mus musculus GN=Atg5 PE=1 SV=1	0.0	[1..275]	[1..275]
ATG5_BOVIN - Autophagy protein 5 OS=Bos taurus GN=ATG5 PE=2 SV=2	0.0	[1..275]	[1..275]
ATG5_RAT - Autophagy protein 5 OS=Rattus norvegicus GN=Atg5 PE=2 SV=1	0.0	[1..275]	[1..275]
ATG5_PIG - Autophagy protein 5 OS=Sus scrofa GN=ATG5 PE=2 SV=1	0.0	[1..275]	[1..275]
gi\|57530282, gi\|... - gi\|57530282\|ref\|NP_001006409.1\| APG5 autophagy 5-like [Gallus gallus], gi\|53136704\|emb\|CAG32681.1\| h...	0.0	[1..275]	[1..275]
gi\|57863778, gi\|... - gi\|57863778\|ref\|NP_001009914.1\| APG5 autophagy 5-like protein isoform 1 [Danio rerio], gi\|50418509\|g...	0.0	[1..275]	[1..273]

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Predicted Domain #1

Region A:
Residues: [1-275]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDDKDVLRD VWFGRIPTCF TLYQDEITER EAEPYYLLLP RVSYLTLVTD KVKKHFQKVM  60
   61 RQEDISEIWF EYEGTPLKWH YPIGLLFDLL ASSSALPWNI TVHFKSFPEK DLLHCPSKDA 120
  121 IEAHFMSCMK EADALKHKSQ VINEMQKKDH KQLWMGLQND RFDQFWAINR KLMEYPAEEN 180
  181 GFRYIPFRIY QTTTERPFIQ KLFRPVAADG QLHTLGDLLK EVCPSAIDPE DGEKKNQVMI 240
  241 HGIEPMLETP LQWLSEHLSY PDNFLHISII PQPTD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	69.09691
Match:	2dymA
Description:	No description for 2dymA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits