YRC Public Data Repository - Protein Structure Prediction

Protein:	EFP_ECOLI
Organism:	Escherichia coli
Length:	188 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for EFP_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|62130416, gi\|... - gi\|62182783\|ref\|YP_219200.1\| elongation factor P [Salmonella enterica subsp. enterica serovar Choler...	269.0	[0..1]	[188..81]
EFP_SACD2 - Elongation factor P OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=efp PE=3 S...	265.0	[0..1]	[187..1]
gi\|88790113, gi\|... - gi\|88812697\|ref\|ZP_01127944.1\| Elongation factor P [Nitrococcus mobilis Nb-231], gi\|88790113\|gb\|EAR2...	262.0	[0..1]	[188..1]
gi\|88700339, gi\|... - gi\|88705249\|ref\|ZP_01102960.1\| Elongation factor P (EF-P) [gamma proteobacterium KT 71], gi\|88700339...	262.0	[0..1]	[187..1]
gi\|45435220, gi\|... - gi\|45440364\|ref\|NP_991903.1\| elongation factor P [Yersinia pestis biovar Microtus str. 91001], gi\|45...	261.0	[0..1]	[188..23]
EFP_PHOLL - Elongation factor P OS=Photorhabdus luminescens subsp. laumondii GN=efp PE=3 SV=1 EFP_PHOLL - Elongation factor P OS=Photorhabdus luminescens subsp. laumondii (strain DSM 15139 / CIP 105565 / TT...	261.0	[0..1]	[188..1]
gi\|77973364 - gi\|77973364\|ref\|ZP_00828913.1\| COG0231: Translation elongation factor P (EF-P)/translation initiatio...	259.0	[0..1]	[188..1]
EFP_SODGM - Elongation factor P OS=Sodalis glossinidius (strain morsitans) GN=efp PE=3 SV=1	259.0	[0..1]	[188..1]
gi\|94500574, gi\|... - gi\|94500574\|ref\|ZP_01307105.1\| translation elongation factor P [Oceanobacter sp. RED65], gi\|94427364...	259.0	[0..1]	[188..1]
gi\|52840542, gi\|... - gi\|52840542\|ref\|YP_094341.1\| hypothetical protein lpg0287 [Legionella pneumophila subsp. pneumophila...	259.0	[0..1]	[188..17]

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Predicted Domain #1

Region A:
Residues: [1-188]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATYYSNDFR AGLKIMLDGE PYAVEASEFV KPGKGQAFAR VKLRRLLTGT RVEKTFKSTD  60
   61 SAEGADVVDM NLTYLYNDGE FWHFMNNETF EQLSADAKAI GDNAKWLLDQ AECIVTLWNG 120
  121 QPISVTPPNF VELEIVDTDP GLKGDTAGTG GKPATLSTGA VVKVPLFVQI GEVIKVDTRS 180
  181 GEYVSRVK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	66.522879
Match:	1ybyA
Description:	Conserved hypothetical protein Cth-95 from Clostridium thermocellum
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits