YRC Public Data Repository - Protein Structure Prediction

Protein:	EFG_ECOLI
Organism:	Escherichia coli
Length:	704 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for EFG_ECOLI.

Description	E-value	Query Range	Subject Range
EFG_SHIFL - Elongation factor G OS=Shigella flexneri GN=fusA PE=3 SV=3 EFG_SHIF8 - Elongation factor G OS=Shigella flexneri serotype 5b (strain 8401) GN=fusA PE=3 SV=1	729.0	[0..1]	[704..1]
gi\|238715960, gi... - gi\|77957336\|ref\|ZP_00821395.1\| COG0480: Translation elongation factors (GTPases) [Yersinia bercovier...	728.0	[0..1]	[704..1]
gi\|77962735, gi\|... - gi\|77962735\|ref\|ZP_00826552.1\| COG0480: Translation elongation factors (GTPases) [Yersinia mollareti...	727.0	[0..1]	[704..1]
EFG1_RALSO - Elongation factor G 1 OS=Ralstonia solanacearum GN=fusA PE=3 SV=1 EFG1_RALSO - Elongation factor G 1 OS=Ralstonia solanacearum (strain GMI1000) GN=fusA PE=3 SV=1	727.0	[0..1]	[703..1]
gi\|113528215, gi... - gi\|113869439\|ref\|YP_727928.1\| elongation factor G [Ralstonia eutropha H16], gi\|113528215\|emb\|CAJ9456...	726.0	[0..1]	[704..1]
EFG1_CUPMC - Elongation factor G 1 OS=Cupriavidus metallidurans (strain ATCC 43123 / DSM 2839 / NBRC 102507 / CH3...	726.0	[0..1]	[704..1]
gi\|169655204, gi... - gi\|254198464\|ref\|ZP_04904885.1\| translation elongation factor G [Burkholderia pseudomallei S13], gi\|... gi\|157810609, gi... - gi\|254300577\|ref\|ZP_04968022.1\| translation elongation factor G [Burkholderia pseudomallei 406e], gi... gi\|254180338, gi... - gi\|254180338\|ref\|ZP_04886936.1\| translation elongation factor G [Burkholderia pseudomallei 1655], gi... gi\|157937977, gi... - gi\|254190301\|ref\|ZP_04896809.1\| translation elongation factor G [Burkholderia pseudomallei Pasteur 5... gi\|217424675, gi... - gi\|217424675\|ref\|ZP_03456172.1\| translation elongation factor G [Burkholderia pseudomallei 576], gi\|... gi\|254206581, gi... - gi\|254206581\|ref\|ZP_04912932.1\| translation elongation factor G [Burkholderia mallei JHU], gi\|194528... gi\|254201240, gi... - gi\|254201240\|ref\|ZP_04907604.1\| translation elongation factor G [Burkholderia mallei FMH], gi\|194523... gi\|134283249, gi... - gi\|134283249\|ref\|ZP_01769950.1\| translation elongation factor G [Burkholderia pseudomallei 305], gi\|... EFG_BURM9 - Elongation factor G OS=Burkholderia mallei (strain NCTC 10229) GN=fusA PE=3 SV=1 gi\|126242191, gi... - gi\|126449321\|ref\|YP_001082987.1\| elongation factor G [Burkholderia mallei NCTC 10247], gi\|126242191\|... EFG2_BURPS - Elongation factor G 2 OS=Burkholderia pseudomallei (strain K96243) GN=fusA2 PE=3 SV=1 gi\|126221122, gi... - gi\|126441629\|ref\|YP_001060753.1\| elongation factor G [Burkholderia pseudomallei 668], gi\|126221122\|g... EFG2_BURMA - Elongation factor G 2 OS=Burkholderia mallei (strain ATCC 23344) GN=fusA2 PE=3 SV=1 gi\|126454030, gi... - gi\|126454030\|ref\|YP_001068037.1\| elongation factor G [Burkholderia pseudomallei 1106a], gi\|126227672... EFG2_BURMA - Elongation factor G 2 OS=Burkholderia mallei GN=fusA2 PE=3 SV=1 EFG2_BURPS - Elongation factor G 2 OS=Burkholderia pseudomallei GN=fusA2 PE=3 SV=1 gi\|85066218 - gi\|85066218\|ref\|ZP_01027071.1\| COG0480: Translation elongation factors (GTPases) [Burkholderia malle... gi\|167847667 - gi\|167847667\|ref\|ZP_02473175.1\| elongation factor G [Burkholderia pseudomallei B7210] gi\|194575862, gi... - gi\|87313813\|ref\|ZP_01094882.1\| COG0480: Translation elongation factors (GTPases) [Burkholderia malle... gi\|167896239 - gi\|167896239\|ref\|ZP_02483641.1\| elongation factor G [Burkholderia pseudomallei 7894] EFG2_BURTA - Elongation factor G 2 OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106... gi\|167817758 - gi\|167817758\|ref\|ZP_02449438.1\| elongation factor G [Burkholderia pseudomallei 91] gi\|226198198, gi... - gi\|226198198\|ref\|ZP_03793769.1\| translation elongation factor G [Burkholderia pseudomallei Pakistan ... EFG2_BURP1 - Elongation factor G 2 OS=Burkholderia pseudomallei (strain 1710b) GN=fusA2 PE=3 SV=1 gi\|167826155 - gi\|167826155\|ref\|ZP_02457626.1\| elongation factor G [Burkholderia pseudomallei 9] gi\|167920846 - gi\|167920846\|ref\|ZP_02507937.1\| elongation factor G [Burkholderia pseudomallei BCC215] gi\|254175172, gi... - gi\|254175172\|ref\|ZP_04881833.1\| translation elongation factor G [Burkholderia mallei ATCC 10399], gi... gi\|237814148, gi... - gi\|237814148\|ref\|YP_002898599.1\| translation elongation factor G [Burkholderia pseudomallei MSHR346]... gi\|167904621 - gi\|167904621\|ref\|ZP_02491826.1\| elongation factor G [Burkholderia pseudomallei NCTC 13177] gi\|167912886 - gi\|167912886\|ref\|ZP_02499977.1\| elongation factor G [Burkholderia pseudomallei 112] gi\|254260909, gi... - gi\|254260909\|ref\|ZP_04951963.1\| translation elongation factor G [Burkholderia pseudomallei 1710a], g... gi\|243060916, gi... - gi\|243060916\|gb\|EES43102.1\| translation elongation factor G [Burkholderia mallei PRL-20], gi\|1670035... gi\|242314316, gi... - gi\|242314316\|ref\|ZP_04813332.1\| translation elongation factor G [Burkholderia pseudomallei 1106b], g... gi\|167721579 - gi\|167721579\|ref\|ZP_02404815.1\| elongation factor G [Burkholderia pseudomallei DM98] gi\|167740553 - gi\|167740553\|ref\|ZP_02413327.1\| elongation factor G [Burkholderia pseudomallei 14] gi\|238520986, gi... - gi\|67640292\|ref\|ZP_00439104.1\| translation elongation factor G [Burkholderia mallei GB8 horse 4], gi... gi\|167582625 - gi\|167582625\|ref\|ZP_02375499.1\| elongation factor G [Burkholderia thailandensis TXDOH] gi\|121228440, gi... - gi\|84521480\|ref\|ZP_01008616.1\| COG0480: Translation elongation factors (GTPases) [Burkholderia malle... gi\|167620739 - gi\|167620739\|ref\|ZP_02389370.1\| elongation factor G [Burkholderia thailandensis Bt4]	725.0	[0..1]	[704..1]
EFG1_CUPPJ - Elongation factor G 1 OS=Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) GN=fusA1 PE=3 SV=1	723.0	[0..1]	[704..1]
gi\|116646458, gi... - gi\|67663348\|ref\|ZP_00460631.1\| Translation elongation factor G:Small GTP-binding protein domain [Bur... gi\|206558638, gi... - gi\|206558638\|ref\|YP_002229398.1\| elongation factor G [Burkholderia cenocepacia J2315], gi\|198034675\|... gi\|118649483, gi... - gi\|170731679\|ref\|YP_001763626.1\| elongation factor G [Burkholderia cenocepacia MC0-3], gi\|169814921\|...	723.0	[0..1]	[704..1]
EFG2_BURXL - Elongation factor G 2 OS=Burkholderia xenovorans (strain LB400) GN=fusA2 PE=3 SV=1	722.0	[0..1]	[704..1]

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Predicted Domain #1

Region A:
Residues: [1-704]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARTTPIARY RNIGISAHID AGKTTTTERI LFYTGVNHKI GEVHDGAATM DWMEQEQERG  60
   61 ITITSAATTA FWSGMAKQYE PHRINIIDTP GHVDFTIEVE RSMRVLDGAV MVYCAVGGVQ 120
  121 PQSETVWRQA NKYKVPRIAF VNKMDRMGAN FLKVVNQIKT RLGANPVPLQ LAIGAEEHFT 180
  181 GVVDLVKMKA INWNDADQGV TFEYEDIPAD MVELANEWHQ NLIESAAEAS EELMEKYLGG 240
  241 EELTEAEIKG ALRQRVLNNE IILVTCGSAF KNKGVQAMLD AVIDYLPSPV DVPAINGILD 300
  301 DGKDTPAERH ASDDEPFSAL AFKIATDPFV GNLTFFRVYS GVVNSGDTVL NSVKAARERF 360
  361 GRIVQMHANK REEIKEVRAG DIAAAIGLKD VTTGDTLCDP DAPIILERME FPEPVISIAV 420
  421 EPKTKADQEK MGLALGRLAK EDPSFRVWTD EESNQTIIAG MGELHLDIIV DRMKREFNVE 480
  481 ANVGKPQVAY RETIRQKVTD VEGKHAKQSG GRGQYGHVVI DMYPLEPGSN PKGYEFINDI 540
  541 KGGVIPGEYI PAVDKGIQEQ LKAGPLAGYP VVDMGIRLHF GSYHDVDSSE LAFKLAASIA 600
  601 FKEGFKKAKP VLLEPIMKVE VETPEENTGD VIGDLSRRRG MLKGQESEVT GVKIHAEVPL 660
  661 SEMFGYATQL RSLTKGRASY TMEFLKYDEA PSNVAQAVIE ARGK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	1darA
Description:	ELONGATION FACTOR G IN COMPLEX WITH GDP
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits