YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|42631947
Organism:	Haemophilus influenzae R2866
Length:	114 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|42631947.

Description	E-value	Query Range	Subject Range
gi\|111611416, gi... - gi\|111611416\|ref\|ZP_01398505.1\| conserved hypothetical protein [Verminephrobacter eiseniae EF01-2], ...	165.0	[0..3]	[113..86]
gi\|217420420, gi... - gi\|217420420\|ref\|ZP_03451925.1\| iron-sulfur cluster assembly accessory protein [Burkholderia pseudom... gi\|194569533, gi... - gi\|254299238\|ref\|ZP_04966688.1\| iron-sulfur cluster assembly accessory protein [Burkholderia pseudom... gi\|226198375, gi... - gi\|226198375\|ref\|ZP_03793944.1\| iron-sulfur cluster assembly accessory protein [Burkholderia pseudom... gi\|237504262, gi... - gi\|237813776\|ref\|YP_002898227.1\| putative conserved hypothetical protein [Burkholderia pseudomallei ... gi\|238561984, gi... - gi\|238561984\|ref\|ZP_00441063.2\| iron-sulfur cluster assembly accessory protein [Burkholderia mallei ... ERPA_BURM9 - Putative iron-sulfur cluster insertion protein ErpA OS=Burkholderia mallei (strain NCTC 10229) GN=er... ERPA_BURMS - Putative iron-sulfur cluster insertion protein ErpA OS=Burkholderia mallei (strain SAVP1) GN=erpA PE... ERPA_BURM7 - Putative iron-sulfur cluster insertion protein ErpA OS=Burkholderia mallei (strain NCTC 10247) GN=er... ERPA_BURP6 - Putative iron-sulfur cluster insertion protein ErpA OS=Burkholderia pseudomallei (strain 668) GN=erp... ERPA_BURP1 - Putative iron-sulfur cluster insertion protein ErpA OS=Burkholderia pseudomallei (strain 1710b) GN=e... ERPA_BURP0 - Putative iron-sulfur cluster insertion protein ErpA OS=Burkholderia pseudomallei (strain 1106a) GN=e... ERPA_BURTA - Putative iron-sulfur cluster insertion protein ErpA OS=Burkholderia thailandensis (strain E264 / ATC... gi\|254261342, gi... - gi\|254261342\|ref\|ZP_04952396.1\| iron-sulfur cluster assembly accessory protein [Burkholderia pseudom... gi\|242138463, gi... - gi\|242315224\|ref\|ZP_04814240.1\| iron-sulfur cluster assembly accessory protein [Burkholderia pseudom... ERPA_BURPS - Putative iron-sulfur cluster insertion protein erpA OS=Burkholderia pseudomallei GN=erpA PE=3 SV=1 ERPA_BURMA - Putative iron-sulfur cluster insertion protein erpA OS=Burkholderia mallei GN=erpA PE=3 SV=1 gi\|194505330, gi... - gi\|254180678\|ref\|ZP_04887276.1\| iron-sulfur cluster assembly accessory protein [Burkholderia pseudom... gi\|160694807, gi... - gi\|254178893\|ref\|ZP_04885547.1\| iron-sulfur cluster assembly accessory protein [Burkholderia mallei ... gi\|254194830, gi... - gi\|254194830\|ref\|ZP_04901260.1\| iron-sulfur cluster assembly accessory protein [Burkholderia pseudom... gi\|194507224, gi... - gi\|254191505\|ref\|ZP_04898008.1\| iron-sulfur cluster assembly accessory protein [Burkholderia pseudom... gi\|254355909, gi... - gi\|254355909\|ref\|ZP_04972187.1\| iron-sulfur cluster assembly accessory protein [Burkholderia mallei ... gi\|167904243 - gi\|167904243\|ref\|ZP_02491448.1\| iron-sulfur cluster assembly accessory protein [Burkholderia pseudom... ERPA_BURPS - Putative iron-sulfur cluster insertion protein ErpA OS=Burkholderia pseudomallei (strain K96243) GN=... gi\|194522849, gi... - gi\|254202612\|ref\|ZP_04908975.1\| iron-sulfur cluster assembly accessory protein [Burkholderia mallei ... gi\|167895853 - gi\|167895853\|ref\|ZP_02483255.1\| iron-sulfur cluster assembly accessory protein [Burkholderia pseudom... ERPA_BURMA - Putative iron-sulfur cluster insertion protein ErpA OS=Burkholderia mallei (strain ATCC 23344) GN=er... gi\|134280487, gi... - gi\|134280487\|ref\|ZP_01767198.1\| iron-sulfur cluster assembly accessory protein [Burkholderia pseudom... gi\|167920455 - gi\|167920455\|ref\|ZP_02507546.1\| iron-sulfur cluster assembly accessory protein [Burkholderia pseudom... gi\|167912504 - gi\|167912504\|ref\|ZP_02499595.1\| iron-sulfur cluster assembly accessory protein [Burkholderia pseudom... gi\|167817376 - gi\|167817376\|ref\|ZP_02449056.1\| iron-sulfur cluster assembly accessory protein [Burkholderia pseudom... gi\|167740162 - gi\|167740162\|ref\|ZP_02412936.1\| iron-sulfur cluster assembly accessory protein [Burkholderia pseudom... gi\|167847266 - gi\|167847266\|ref\|ZP_02472774.1\| iron-sulfur cluster assembly accessory protein [Burkholderia pseudom... gi\|167825783 - gi\|167825783\|ref\|ZP_02457254.1\| iron-sulfur cluster assembly accessory protein [Burkholderia pseudom... gi\|167580601 - gi\|167580601\|ref\|ZP_02373475.1\| iron-sulfur cluster assembly accessory protein [Burkholderia thailan... gi\|243063547, gi... - gi\|243063547\|gb\|EES45733.1\| iron-sulfur cluster assembly accessory protein [Burkholderia mallei PRL-... gi\|167721188 - gi\|167721188\|ref\|ZP_02404424.1\| iron-sulfur cluster assembly accessory protein [Burkholderia pseudom... gi\|167618709 - gi\|167618709\|ref\|ZP_02387340.1\| iron-sulfur cluster assembly accessory protein [Burkholderia thailan...	161.0	[0..2]	[114..10]
ERPA1_BURVG - Putative iron-sulfur cluster insertion protein ErpA 1 OS=Burkholderia vietnamiensis (strain G4 / LMG...	160.0	[0..2]	[114..11]
ERPA_METFK - Putative iron-sulfur cluster insertion protein ErpA OS=Methylobacillus flagellatus (strain KT / ATCC...	160.0	[0..2]	[113..5]
gi\|170135481, gi... - gi\|170699599\|ref\|ZP_02890638.1\| iron-sulfur cluster assembly accessory protein [Burkholderia ambifar... ERPA_BURCM - Putative iron-sulfur cluster insertion protein ErpA OS=Burkholderia ambifaria (strain ATCC BAA-244 /... ERPA_BURA4 - Putative iron-sulfur cluster insertion protein ErpA OS=Burkholderia ambifaria (strain MC40-6) GN=erp...	160.0	[0..2]	[114..11]
ERPA_DECAR - Putative iron-sulfur cluster insertion protein ErpA OS=Dechloromonas aromatica (strain RCB) GN=erpA ...	159.0	[0..3]	[113..5]
ERPA_BORA1 - Putative iron-sulfur cluster insertion protein ErpA OS=Bordetella avium (strain 197N) GN=erpA PE=3 S...	159.0	[0..5]	[114..14]
gi\|221729268, gi... - gi\|222109824\|ref\|YP_002552088.1\| iron-sulfur cluster assembly accessory protein [Diaphorobacter sp. ... ERPA_ACISJ - Putative iron-sulfur cluster insertion protein ErpA OS=Acidovorax sp. (strain JS42) GN=erpA PE=3 SV=...	159.0	[0..2]	[114..9]
ERPA2_METCA - Iron-sulfur cluster insertion protein erpA 2 OS=Methylococcus capsulatus GN=erpA2 PE=3 SV=1 ERPA2_METCA - Iron-sulfur cluster insertion protein ErpA 2 OS=Methylococcus capsulatus (strain ATCC 33009 / NCIMB ...	159.0	[0..3]	[114..19]
ERPA_BURS3 - Putative iron-sulfur cluster insertion protein erpA OS=Burkholderia sp. (strain 383) GN=erpA PE=3 SV... ERPA_BURL3 - Putative iron-sulfur cluster insertion protein ErpA OS=Burkholderia lata (strain ATCC 17760 / LMG 22...	159.0	[0..2]	[114..11]

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Predicted Domain #1

Region A:
Residues: [1-114]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIDDMAVPLT FTDAAANKVK SLISEEENTD LKLRVYITGG GCSGFQYGFT FDEKVNDGDL  60
   61 TIEKSGVQLV IDPMSLQYLI GGTVDYTEGL EGSRFTVNNP NATSTCGCGS SFSI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	39.69897
Match:	2apnA
Description:	No description for 2apnA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits