YRC Public Data Repository - Protein Structure Prediction

Protein:	PPIC_ECOLI
Organism:	Escherichia coli
Length:	93 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PPIC_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|89158857, gi\|... - gi\|89211551\|ref\|ZP_01189911.1\| PpiC-type peptidyl-prolyl cis-trans isomerase [Halothermothrix orenii...	142.0	[0..2]	[92..197]
gi\|91798999, gi\|... - gi\|92116105\|ref\|YP_575834.1\| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrobacter hamburgensis...	135.0	[0..3]	[92..150]
RPA0511 - RPA0511 PpiC-type peptidyl-prolyl cis-trans isomerase 568058:568993 forward MW:33354	135.0	[0..3]	[92..150]
gi\|86570683, gi\|... - gi\|86747655\|ref\|YP_484151.1\| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas palustr...	135.0	[0..3]	[92..150]
gi\|77960589, gi\|... - gi\|77960589\|ref\|ZP_00824454.1\| COG0760: Parvulin-like peptidyl-prolyl isomerase [Yersinia mollaretii...	134.0	[0..1]	[93..6]
gi\|83751037 - gi\|83751037\|ref\|ZP_00947451.1\| COG0760: Parvulin-like peptidyl-prolyl isomerase [Bartonella bacillif...	134.0	[0..3]	[92..143]
gi\|238784761, gi... - gi\|77957842\|ref\|ZP_00821888.1\| COG0760: Parvulin-like peptidyl-prolyl isomerase [Yersinia bercovieri...	133.0	[0..1]	[93..1]
gi\|71740281, gi\|... - gi\|71839222\|ref\|ZP_00678974.1\| PpiC-type peptidyl-prolyl cis-trans isomerase [Pelobacter propionicus...	133.0	[0..2]	[92..147]
gi\|78514671, gi\|... - gi\|78697358\|ref\|ZP_00861865.1\| conserved hypothetical protein [Bradyrhizobium sp. BTAi1], gi\|7851467...	133.0	[0..3]	[92..149]
gi\|77972627, gi\|... - gi\|77972627\|ref\|ZP_00828188.1\| COG0760: Parvulin-like peptidyl-prolyl isomerase [Yersinia frederikse... gi\|238794291, gi... - gi\|238794291\|ref\|ZP_04637904.1\| PpiC-type peptidyl-prolyl cis-trans isomerase [Yersinia intermedia A...	133.0	[0..1]	[93..6]

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Predicted Domain #1

Region A:
Residues: [1-93]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKTAAALHI LVKEEKLALD LLEQIKNGAD FGKLAKKHSI CPSGKRGGDL GEFRQGQMVP  60
   61 AFDKVVFSCP VLEPTGPLHT QFGYHIIKVL YRN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.522879
Match:	1jnsA
Description:	Parvulin 10 (rotamase C)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
peptidyl-prolyl cis-trans isomerase activity	4.4182664267098	bayes_pls_golite062009
cis-trans isomerase activity	4.33661522951196	bayes_pls_golite062009
isomerase activity	2.83057106437196	bayes_pls_golite062009
macrolide binding	1.34183721806994	bayes_pls_golite062009
catalytic activity	1.25572252987503	bayes_pls_golite062009
FK506 binding	1.11705415888427	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: