YRC Public Data Repository - Protein Structure Prediction

Protein:	RL33_ECOLI
Organism:	Escherichia coli
Length:	55 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RL33_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|84690282, gi\|... - gi\|84703848\|ref\|ZP_01017676.1\| 50S ribosomal protein L33 [Parvularcula bermudensis HTCC2503], gi\|846...	81.0	[0..1]	[55..30]
gi\|90437990, gi\|... - gi\|90580919\|ref\|ZP_01236721.1\| 50S ribosomal protein L33 [Vibrio angustum S14], gi\|90437990\|gb\|EAS63... gi\|89047931, gi\|... - gi\|89076360\|ref\|ZP_01162693.1\| 50S ribosomal protein L33 [Photobacterium sp. SKA34], gi\|89047931\|gb\|...	78.0	[0..1]	[55..1]
gi\|86163693, gi\|... - gi\|87120855\|ref\|ZP_01076747.1\| RpmG protein [Marinomonas sp. MED121], gi\|86163693\|gb\|EAQ64966.1\| Rpm...	77.0	[0..2]	[55..3]
RL33_VIBCH - 50S ribosomal protein L33 OS=Vibrio cholerae GN=rpmG PE=3 SV=1 gi\|121586300, gi... - gi\|121586300\|ref\|ZP_01676089.1\| ribosomal protein L33 [Vibrio cholerae 2740-80], gi\|121549420\|gb\|EAX... gi\|153214736, gi... - gi\|153214736\|ref\|ZP_01949581.1\| ribosomal protein L33 [Vibrio cholerae 1587], gi\|124115172\|gb\|EAY339... gi\|153221471, gi... - gi\|153221471\|ref\|ZP_01952429.1\| ribosomal protein L33 [Vibrio cholerae MAK 757], gi\|124119655\|gb\|EAY... gi\|153800825, gi... - gi\|153800825\|ref\|ZP_01955411.1\| ribosomal protein L33 [Vibrio cholerae MZO-3], gi\|124123656\|gb\|EAY42... gi\|126509425, gi... - gi\|153820021\|ref\|ZP_01972688.1\| ribosomal protein L33 [Vibrio cholerae NCTC 8457], gi\|126509425\|gb\|E... gi\|153821799, gi... - gi\|229509350\|ref\|ZP_04398833.1\| LSU ribosomal protein L33p [Vibrio cholerae B33], gi\|229353665\|gb\|EE... gi\|254851349, gi... - gi\|75831242\|ref\|ZP_00760508.1\| COG0267: Ribosomal protein L33 [Vibrio cholerae MO10], gi\|254851349\|r... RL33_VIBCM - 50S ribosomal protein L33 OS=Vibrio cholerae serotype O1 (strain M66-2) GN=rpmG PE=3 SV=1 gi\|229506980, gi... - gi\|229506980\|ref\|ZP_04396488.1\| LSU ribosomal protein L33p [Vibrio cholerae BX 330286], gi\|229356085... RL33_VIBCH - 50S ribosomal protein L33 OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) G... gi\|75819381, gi\|... - gi\|75819381\|ref\|ZP_00749464.1\| COG0267: Ribosomal protein L33 [Vibrio cholerae V51], gi\|254225707\|re... gi\|150423740, gi... - gi\|254286325\|ref\|ZP_04961284.1\| ribosomal protein L33 [Vibrio cholerae AM-19226], gi\|197752315\|ref\|Y... gi\|229512788, gi... - gi\|229512788\|ref\|ZP_04402256.1\| LSU ribosomal protein L33p [Vibrio cholerae TMA 21], gi\|229350298\|gb... RL33_VIBC3 - 50S ribosomal protein L33 OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / ... gi\|148873125, gi... - gi\|153831393\|ref\|ZP_01984060.1\| ribosomal protein L33 [Vibrio cholerae 623-39], gi\|148873125\|gb\|EDL7... gi\|229346723, gi... - gi\|229516297\|ref\|ZP_04405745.1\| LSU ribosomal protein L33p [Vibrio cholerae RC9], gi\|229346723\|gb\|EE... gi\|153826356, gi... - gi\|153826356\|ref\|ZP_01979023.1\| ribosomal protein L33 [Vibrio cholerae MZO-2], gi\|149739925\|gb\|EDM54... gi\|229521063, gi... - gi\|229521063\|ref\|ZP_04410484.1\| LSU ribosomal protein L33p [Vibrio cholerae TM 11079-80], gi\|2293419... gi\|121628621, gi... - gi\|75814853\|ref\|ZP_00745397.1\| COG0267: Ribosomal protein L33 [Vibrio cholerae V52], gi\|121729446\|re... gi\|229524829, gi... - gi\|229524829\|ref\|ZP_04414234.1\| LSU ribosomal protein L33p [Vibrio cholerae bv. albensis VL426], gi\|... gi\|229527278, gi... - gi\|229527278\|ref\|ZP_04416671.1\| LSU ribosomal protein L33p [Vibrio cholerae 12129(1)], gi\|229335286\|... gi\|229369143, gi... - gi\|229606488\|ref\|YP_002877136.1\| LSU ribosomal protein L33p [Vibrio cholerae MJ-1236], gi\|229369143\|...	77.0	[0..1]	[55..1]
gi\|15807043, gi\|... - gi\|6459841\|gb\|AAF11599.1\|AE002041_3 ribosomal protein L33 [Deinococcus radiodurans R1], gi\|15807043\|... gi\|28948945, gi\|... - gi\|7473826\|pir\|\|D75321 ribosomal protein L33 - Deinococcus radiodurans (strain R1), gi\|51247398\|pdb\|... gi\|66361047\|pdb\|... - Chain 6, Crystal Structure Of 70s Ribosome With Thrs Operator And Trnas. Large Subunit. The Coordina... gi\|88192402, gi\|... - gi\|88192402\|pdb\|2B9P\|6 Chain 6, 50s Ribosomal Subunit From A Crystal Structure Of The Ribosome In Co...	77.0	[0..1]	[54..28]
RL33_BURPS - 50S ribosomal protein L33 OS=Burkholderia pseudomallei (strain K96243) GN=rpmG PE=3 SV=1 RL33_BURMA - 50S ribosomal protein L33 OS=Burkholderia mallei (strain ATCC 23344) GN=rpmG PE=3 SV=1 RL33_BURM1 - 50S ribosomal protein L33 OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=rpmG PE=3 SV=1 RL33_BURP8 - 50S ribosomal protein L33 OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=rpmG PE=3 SV=1 RL33_BURM9 - 50S ribosomal protein L33 OS=Burkholderia mallei (strain NCTC 10229) GN=rpmG PE=3 SV=1 gi\|237811179, gi... - gi\|237811179\|ref\|YP_002895630.1\| ribosomal protein L33 [Burkholderia pseudomallei MSHR346], gi\|23750... gi\|225933455, gi... - gi\|226194370\|ref\|ZP_03789968.1\| 50S ribosomal protein L33 [Burkholderia pseudomallei Pakistan 9], gi... RL33_BURPS - 50S ribosomal protein L33 OS=Burkholderia pseudomallei GN=rpmG PE=3 SV=1 RL33_BURMA - 50S ribosomal protein L33 OS=Burkholderia mallei GN=rpmG PE=3 SV=1 gi\|169653338, gi... - gi\|67761564\|ref\|ZP_00500272.1\| COG0267: Ribosomal protein L33 [Burkholderia pseudomallei S13], gi\|25... gi\|85065422 - gi\|85065422\|ref\|ZP_01026275.1\| COG0267: Ribosomal protein L33 [Burkholderia mallei 10229] RL33_BURMS - 50S ribosomal protein L33 OS=Burkholderia mallei (strain SAVP1) GN=rpmG PE=3 SV=1 gi\|157938549, gi... - gi\|67754753\|ref\|ZP_00493657.1\| COG0267: Ribosomal protein L33 [Burkholderia pseudomallei Pasteur], g... RL33_BURP1 - 50S ribosomal protein L33 OS=Burkholderia pseudomallei (strain 1710b) GN=rpmG PE=3 SV=1 gi\|148025269, gi... - gi\|87317615\|ref\|ZP_01098622.1\| COG0267: Ribosomal protein L33 [Burkholderia mallei 2002721280], gi\|2... gi\|134247394, gi... - gi\|134281088\|ref\|ZP_01767797.1\| 50S ribosomal protein L33 [Burkholderia pseudomallei 305], gi\|134247... RL33_BURTA - 50S ribosomal protein L33 OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP... gi\|67641256, gi\|... - gi\|67641256\|ref\|ZP_00440038.1\| 50S ribosomal protein L33 [Burkholderia mallei GB8 horse 4], gi\|23852... gi\|84362608, gi\|... - gi\|84362608\|ref\|ZP_00987225.1\| COG0267: Ribosomal protein L33 [Burkholderia dolosa AUO158], gi\|25425... gi\|100233610, gi... - gi\|83678244\|ref\|ZP_00939974.1\| COG0267: Ribosomal protein L33 [Burkholderia pseudomallei 406e], gi\|1... gi\|67638005, gi\|... - gi\|67638005\|ref\|ZP_00436942.1\| COG0267: Ribosomal protein L33 [Burkholderia mallei 10399], gi\|100917... RL33_BURM7 - 50S ribosomal protein L33 OS=Burkholderia mallei (strain NCTC 10247) GN=rpmG PE=3 SV=1 RL33_BURP6 - 50S ribosomal protein L33 OS=Burkholderia pseudomallei (strain 668) GN=rpmG PE=3 SV=1 gi\|67672216, gi\|... - gi\|99911496\|ref\|ZP_01318356.1\| hypothetical protein Bpse1_03002237 [Burkholderia pseudomallei 1655],... gi\|161370776, gi... - gi\|90291780\|ref\|ZP_01211401.1\| hypothetical protein Bpse17_02003536 [Burkholderia pseudomallei 1710a... gi\|254202498, gi... - gi\|83621789\|ref\|ZP_00932197.1\| COG0267: Ribosomal protein L33 [Burkholderia mallei FMH], gi\|25420249... gi\|194527717, gi... - gi\|83626644\|ref\|ZP_00936868.1\| COG0267: Ribosomal protein L33 [Burkholderia mallei JHU], gi\|25420783... RL33_BURP0 - 50S ribosomal protein L33 OS=Burkholderia pseudomallei (strain 1106a) GN=rpmG PE=3 SV=1 gi\|82534280, gi\|... - gi\|82534280\|ref\|ZP_00893321.1\| hypothetical protein Bpse110_02004460 [Burkholderia pseudomallei 1106... gi\|167618184 - gi\|167618184\|ref\|ZP_02386815.1\| ribosomal protein L33 [Burkholderia thailandensis Bt4] gi\|167718467 - gi\|167718467\|ref\|ZP_02401703.1\| ribosomal protein L33 [Burkholderia pseudomallei DM98] gi\|167569088 - gi\|167569088\|ref\|ZP_02361962.1\| ribosomal protein L33 [Burkholderia oklahomensis C6786] gi\|167580120 - gi\|167580120\|ref\|ZP_02372994.1\| ribosomal protein L33 [Burkholderia thailandensis TXDOH] gi\|167823103 - gi\|167823103\|ref\|ZP_02454574.1\| ribosomal protein L33 [Burkholderia pseudomallei 9] gi\|167835743 - gi\|167835743\|ref\|ZP_02462626.1\| ribosomal protein L33 [Burkholderia thailandensis MSMB43] gi\|167737516 - gi\|167737516\|ref\|ZP_02410290.1\| ribosomal protein L33 [Burkholderia pseudomallei 14] gi\|167814635 - gi\|167814635\|ref\|ZP_02446315.1\| ribosomal protein L33 [Burkholderia pseudomallei 91] gi\|166998910, gi... - gi\|243064991\|gb\|EES47177.1\| 50S ribosomal protein L33 [Burkholderia mallei PRL-20], gi\|166998910\|ref... gi\|167561866 - gi\|167561866\|ref\|ZP_02354782.1\| ribosomal protein L33 [Burkholderia oklahomensis EO147] gi\|221174669, gi... - gi\|221205831\|ref\|ZP_03578846.1\| 50S ribosomal protein L33 [Burkholderia multivorans CGD2], gi\|221174... gi\|221168848, gi... - gi\|221211487\|ref\|ZP_03584466.1\| 50S ribosomal protein L33 [Burkholderia multivorans CGD1], gi\|221168... gi\|167901648 - gi\|167901648\|ref\|ZP_02488853.1\| ribosomal protein L33 [Burkholderia pseudomallei NCTC 13177] gi\|167909898 - gi\|167909898\|ref\|ZP_02496989.1\| ribosomal protein L33 [Burkholderia pseudomallei 112] gi\|167844666 - gi\|167844666\|ref\|ZP_02470174.1\| ribosomal protein L33 [Burkholderia pseudomallei B7210] gi\|167893195 - gi\|167893195\|ref\|ZP_02480597.1\| ribosomal protein L33 [Burkholderia pseudomallei 7894] gi\|217419828, gi... - gi\|217419828\|ref\|ZP_03451334.1\| 50S ribosomal protein L33 [Burkholderia pseudomallei 576], gi\|217397... gi\|221199267, gi... - gi\|221199267\|ref\|ZP_03572311.1\| 50S ribosomal protein L33 [Burkholderia multivorans CGD2M], gi\|22118... gi\|167917920 - gi\|167917920\|ref\|ZP_02505011.1\| ribosomal protein L33 [Burkholderia pseudomallei BCC215] gi\|160696374, gi... - gi\|254175330\|ref\|ZP_04881990.1\| 50S ribosomal protein L33 [Burkholderia mallei ATCC 10399], gi\|19431...	77.0	[0..1]	[55..1]
RL33_PHOPR - 50S ribosomal protein L33 OS=Photobacterium profundum (strain SS9) GN=rpmG PE=3 SV=1 gi\|148833543, gi... - gi\|149192620\|ref\|ZP_01870770.1\| 50S ribosomal protein L33 [Vibrio shilonii AK1], gi\|148833543\|gb\|EDL... gi\|90323988, gi\|... - gi\|90414932\|ref\|ZP_01222896.1\| 50S ribosomal protein L33 [Photobacterium profundum 3TCK], gi\|9032398... RL33_PHOPR - 50S ribosomal protein L33 OS=Photobacterium profundum GN=rpmG PE=3 SV=1 gi\|84378159, gi\|... - gi\|84386869\|ref\|ZP_00989893.1\| 50S ribosomal protein L33 [Vibrio splendidus 12B01], gi\|84378159\|gb\|E... gi\|85834999, gi\|... - gi\|86147284\|ref\|ZP_01065599.1\| 50S ribosomal protein L33 [Vibrio sp. MED222], gi\|85834999\|gb\|EAQ5314... RL33_VIBTL - 50S ribosomal protein L33 OS=Vibrio tasmaniensis (strain LGP32) GN=rpmG PE=3 SV=1	77.0	[0..1]	[55..1]
RL33_AROAE - 50S ribosomal protein L33 OS=Aromatoleum aromaticum (strain EbN1) GN=rpmG PE=3 SV=1	77.0	[0..1]	[55..1]
gi\|253783292, gi... - gi\|253991842\|ref\|YP_003043198.1\| 50s ribosomal protein l33 [Photorhabdus asymbiotica], gi\|253783292\|... RL33_PHOLL - 50S ribosomal protein L33 OS=Photorhabdus luminescens subsp. laumondii (strain DSM 15139 / CIP 10556... RL33_PHOLL - 50S ribosomal protein L33 OS=Photorhabdus luminescens subsp. laumondii GN=rpmG PE=3 SV=1	76.0	[0..1]	[55..1]
RL33_YERPB - 50S ribosomal protein L33 OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=rpmG PE=3 SV=... RL33_YERPY - 50S ribosomal protein L33 OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=rpmG PE=3 SV... RL33_YERPS - 50S ribosomal protein L33 OS=Yersinia pseudotuberculosis GN=rpmG PE=3 SV=1 RL33_YERPN - 50S ribosomal protein L33 OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=rpmG PE=3 SV=1 gi\|166011461, gi... - gi\|166011461\|ref\|ZP_02232359.1\| ribosomal protein L33 [Yersinia pestis biovar Antiqua str. E1979001]... gi\|165926072, gi... - gi\|165926072\|ref\|ZP_02221904.1\| ribosomal protein L33 [Yersinia pestis biovar Orientalis str. F19910... RL33_YERPG - 50S ribosomal protein L33 OS=Yersinia pestis bv. Antiqua (strain Angola) GN=rpmG PE=3 SV=1 RL33_ERWCT - 50S ribosomal protein L33 OS=Erwinia carotovora subsp. atroseptica GN=rpmG PE=3 SV=1 gi\|167402100, gi... - gi\|167402100\|ref\|ZP_02307577.1\| ribosomal protein L33 [Yersinia pestis biovar Antiqua str. UG05-0454... RL33_YERP3 - 50S ribosomal protein L33 OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=rpmG PE=... gi\|166213684, gi... - gi\|166213684\|ref\|ZP_02239719.1\| ribosomal protein L33 [Yersinia pestis biovar Antiqua str. B42003004... gi\|167054349, gi... - gi\|167426660\|ref\|ZP_02318413.1\| ribosomal protein L33 [Yersinia pestis biovar Mediaevalis str. K1973... gi\|167419126, gi... - gi\|167419126\|ref\|ZP_02310879.1\| ribosomal protein L33 [Yersinia pestis biovar Orientalis str. MG05-1... tr\|S5EMX6\|S5EMX6... - 50S ribosomal protein L33 OS=Serratia liquefaciens ATCC 27592 GN=rpmG PE=4 SV=1 gi\|149290293, gi... - gi\|150260885\|ref\|ZP_01917613.1\| 50S ribosomal protein L33 [Yersinia pestis CA88-4125], gi\|149290293\|... RL33_YERPP - 50S ribosomal protein L33 OS=Yersinia pestis (strain Pestoides F) GN=rpmG PE=3 SV=1 tr\|G0BD18\|G0BD18... - 50S ribosomal protein L33 OS=Serratia plymuthica (strain AS9) GN=rpmG PE=3 SV=1 tr\|G0BUW3\|G0BUW3... - 50S ribosomal protein L33 OS=Serratia sp. AS12 GN=rpmG PE=3 SV=1 tr\|G0C822\|G0C822... - 50S ribosomal protein L33 OS=Serratia sp. AS13 GN=rpmG PE=3 SV=1 gi\|227115114 - gi\|227115114\|ref\|ZP_03828770.1\| 50S ribosomal protein L33 [Pectobacterium carotovorum subsp. brasili... gi\|227328063 - gi\|227328063\|ref\|ZP_03832087.1\| 50S ribosomal protein L33 [Pectobacterium carotovorum subsp. carotov... gi\|229706612, gi... - gi\|229836164\|ref\|ZP_04456332.1\| 50S ribosomal subunit protein L33 [Yersinia pestis Pestoides A], gi\|... gi\|229839900, gi... - gi\|229839900\|ref\|ZP_04460059.1\| 50S ribosomal subunit protein L33 [Yersinia pestis biovar Orientalis... gi\|229841982, gi... - gi\|229841982\|ref\|ZP_04462137.1\| 50S ribosomal subunit protein L33 [Yersinia pestis biovar Orientalis... gi\|255054621, gi... - gi\|255054621\|ref\|ZP_05306864.1\| ribosomal protein L33 [Pectobacterium wasabiae WPP163], gi\|254989467... tr\|I3AJ88\|I3AJ88... - 50S ribosomal protein L33 OS=Serratia plymuthica S13 GN=rpmG PE=4 SV=1, 50S ribosomal protein L33 OS... gi\|45439917, gi\|... - gi\|45439917\|ref\|NP_991456.1\| 50S ribosomal protein L33 [Yersinia pestis biovar Microtus str. 91001],... gi\|22124011, gi\|... - gi\|22124011\|ref\|NP_667434.1\| 50S ribosomal protein L33 [Yersinia pestis KIM], gi\|21956753\|gb\|AAM8368... RL33_YERPS - 50S ribosomal protein L33 OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=rpmG PE=3 SV... RL33_PECAS - 50S ribosomal protein L33 OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) GN=rpmG P... gi\|218927272, gi... - gi\|218927272\|ref\|YP_002345147.1\| 50S ribosomal protein L33 [Yersinia pestis CO92], gi\|16120404\|ref\|N... RL33_YERPE - 50S ribosomal protein L33 OS=Yersinia pestis GN=rpmG PE=3 SV=1 gi\|165936299, gi... - gi\|89103901\|ref\|ZP_01176461.1\| COG0267: Ribosomal protein L33 [Yersinia pestis biovar Orientalis str... RL33_YERPA - 50S ribosomal protein L33 OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=rpmG PE=3 SV=1	76.0	[0..1]	[55..1]

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Predicted Domain #1

Region A:
Residues: [1-55]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKGIREKIK LVSSAGTGHF YTTTKNKRTK PEKLELKKFD PVVRQHVIYK EAKIK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	15.0
Match:	1nkw1
Description:	50S subunit
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits