YRC Public Data Repository - Protein Structure Prediction

Protein:	RL31_PROMM
Organism:	Prochlorococcus marinus str. MIT 9313
Length:	93 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RL31_PROMM.

Description	E-value	Query Range	Subject Range
gi\|62182555, gi\|... - gi\|62182555\|ref\|YP_218972.1\| 50S ribosomal protein L31 [Salmonella enterica subsp. enterica serovar ...	125.0	[0..2]	[71..34]
gi\|83648617, gi\|... - gi\|83648617\|ref\|YP_437052.1\| ribosomal protein L31 [Hahella chejuensis KCTC 2396], gi\|83636660\|gb\|AB...	125.0	[0..1]	[73..47]
gi\|88807913, gi\|... - gi\|88807913\|ref\|ZP_01123424.1\| 50S ribosomal protein L31 [Synechococcus sp. WH 7805], gi\|88787952\|gb...	125.0	[0..1]	[84..1]
gi\|148550162, gi... - gi\|82736115\|ref\|ZP_00898975.1\| Ribosomal protein L31 [Pseudomonas putida F1], gi\|82716758\|gb\|EAP5181... gi\|24986872, gi\|... - gi\|26991763\|ref\|NP_747188.1\| ribosomal protein L31 [Pseudomonas putida KT2440], gi\|24986872\|gb\|AAN70...	125.0	[0..2]	[72..30]
RL31_SYNP6 - 50S ribosomal protein L31 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rpmE ... RL31_SYNE7 - 50S ribosomal protein L31 OS=Synechococcus elongatus (strain PCC 7942) GN=rpmE PE=3 SV=1	124.0	[0..1]	[77..1]
gi\|52306555, gi\|... - gi\|52424503\|ref\|YP_087640.1\| RpmE protein [Mannheimia succiniciproducens MBEL55E], gi\|52306555\|gb\|AA...	123.0	[0..2]	[72..5]
RL31_ACTSZ - 50S ribosomal protein L31 OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=rpmE PE=3 SV=...	123.0	[0..2]	[72..1]
gi\|110596933, gi... - gi\|110596933\|ref\|ZP_01385223.1\| ribosomal protein L31 [Chlorobium ferrooxidans DSM 13031], gi\|110341...	123.0	[0..1]	[76..27]
gi\|87284756, gi\|... - gi\|87300885\|ref\|ZP_01083727.1\| 50S ribosomal protein L31 [Synechococcus sp. WH 5701], gi\|87284756\|gb...	123.0	[0..1]	[86..1]

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Predicted Domain #1

Region A:
Residues: [1-93]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPKPDIHPNW YPDAKVICNG EVVMTTGSTQ PELHVDVWSG NHPFFTGTQK ILDTEGRVDR  60
   61 FMRKYGMGSA DAAADEKKPD AKNNNKDNTS KED

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.69897
Match:	1vs6Z
Description:	No description for 1vs6Z was found.

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	3.97305697662832	bayes_pls_golite062009
structural molecule activity	3.68600357151384	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: