YRC Public Data Repository - Protein Structure Prediction

Protein:	RSSA1_ARATH
Organism:	Arabidopsis thaliana
Length:	298 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RSSA1_ARATH.

Description	E-value	Query Range	Subject Range
gi\|73963290, gi\|... - gi\|73963292\|ref\|XP_866616.1\| PREDICTED: similar to 40S ribosomal protein SA (p40) (34/67 kDa laminin...	394.0	[0..5]	[297..1]
RSSA_CHICK - 40S ribosomal protein SA OS=Gallus gallus GN=RPSA PE=3 SV=1	394.0	[0..5]	[297..1]
gi\|61370578, gi\|... - gi\|61370584\|gb\|AAX43520.1\| laminin receptor 1 [synthetic construct], gi\|61370578\|gb\|AAX43519.1\| lami...	393.0	[0..5]	[296..1]
gi\|30047125 - gi\|30047125\|gb\|AAH50688.1\| Ribosomal protein SA [Homo sapiens]	392.0	[0..5]	[296..1]
RSSA_PIG - 40S ribosomal protein SA OS=Sus scrofa GN=RPSA PE=1 SV=3	392.0	[0..5]	[297..1]
RSSA_CHLAE - 40S ribosomal protein SA OS=Chlorocebus aethiops GN=RPSA PE=2 SV=3 gi\|90075168 - gi\|90075168\|dbj\|BAE87264.1\| unnamed protein product [Macaca fascicularis] ENSCJAT00000009364 - null gi\|109041469, gi... - gi\|109041484\|ref\|XP_001083829.1\| PREDICTED: similar to 40S ribosomal protein SA (p40) (34/67 kDa lam...	391.0	[0..5]	[296..1]
RSSA_BOVIN - 40S ribosomal protein SA OS=Bos taurus GN=RPSA PE=2 SV=4 gi\|187609256 - gi\|187609256\|pdb\|2ZKQ\|BB Chain b, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Compl...	391.0	[0..5]	[297..1]

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Predicted Domain #1

Region A:
Residues: [1-192]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATNGSASSA QLSQKEADVR MMCAAEVHLG TKNCNYQMER YVFKRRNDGI YIFNLGKTWE  60
   61 KLQMAARVIV AIENPQDIIV QSARPYGQRA VLKFAQYTGA NAIAGRHTPG TFTNQMQTSF 120
  121 SEPRLLILTD PRTDHQPIKE GALGNIPIIA FCDTDSPMRF VDIGIPANNK GKHSIGCLFW 180
  181 LLARMVLQMR GT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	60.0
Match:	1s1hB
Description:	Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1H, Contains 40S subunit. The 60S Ribosomal Subunit Is In File 1S1I.
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [193-298]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IAAGQKWDVM VDLFFYREPE ETKPEDEDEA GPQAEYGALP APEYGMVGGD QWTTAQIPDA  60
   61 AWPGEGQAPI SAAPAAASWS DSAAAPADGG WEAAAPPSGA PAAGWE

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.447	N/A	N/A	d.79.3	L30e-like
View	Download	0.446	N/A	N/A	d.79.3	L30e-like
View	Download	0.421	N/A	N/A	a.47.2	t-snare proteins
View	Download	0.421	N/A	N/A	a.47.2	t-snare proteins
View	Download	0.394	N/A	N/A	d.146.1	Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain
View	Download	0.394	N/A	N/A	d.146.1	Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain
View	Download	0.339	N/A	N/A	c.3.1	FAD/NAD(P)-binding domain
View	Download	0.325	N/A	N/A	a.24.13	Domain of the SRP/SRP receptor G-proteins
View	Download	0.256	N/A	N/A	a.121.1	Tetracyclin repressor-like, C-terminal domain
View	Download	0.247	N/A	N/A	b.6.1	Cupredoxins

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits