YRC Public Data Repository - Protein Structure Prediction

Protein:	NDK_ECOLI
Organism:	Escherichia coli
Length:	143 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NDK_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|146096940, gi... - gi\|146096940\|ref\|XP_001467986.1\| nucleoside diphosphate kinase b [Leishmania infantum JPCM5], gi\|146... gi\|134072351, gi... - gi\|134072352\|emb\|CAM71059.1\| nucleoside diphosphate kinase b [Leishmania infantum], gi\|134072351\|emb...	234.0	[0..1]	[142..1]
gi\|5852124, gi\|6... - gi\|68128691\|emb\|CAJ08823.1\| nucleoside diphosphate kinase b [Leishmania major], gi\|5852124\|emb\|CAB55... gi\|157874264 - gi\|157874264\|ref\|XP_001685619.1\| nucleoside diphosphate kinase b [Leishmania major]	233.0	[0..1]	[142..1]
gi\|58376473, gi\|... - gi\|58376473\|ref\|XP_308641.2\| ENSANGP00000011253 [Anopheles gambiae str. PEST], gi\|55245735\|gb\|EAA045...	231.0	[0..4]	[142..6]
gi\|185135416, gi... - gi\|28436149\|gb\|AAO42980.1\| nucleoside diphosphate kinase [Oncorhynchus mykiss], gi\|185135416\|ref\|NP_...	231.0	[0..4]	[142..5]
gi\|79160090, gi\|... - gi\|79160090\|gb\|AAI07895.1\| NME1-NME2 protein [Homo sapiens], gi\|119614969\|gb\|EAW94563.1\| hCG2001850,...	231.0	[0..1]	[141..141]
gi\|70886070 - gi\|70886070\|gb\|EAN98863.1\| nucleoside diphosphate kinase, putative [Trypanosoma cruzi] gi\|71667532 - gi\|71667532\|ref\|XP_820714.1\| nucleoside diphosphate kinase [Trypanosoma cruzi strain CL Brener]	231.0	[0..1]	[142..1]
gi\|37590341, gi\|... - gi\|55962740\|emb\|CAI11562.1\| novel nucleoside-diphosphate kinase (wu:fk59e05) [Danio rerio], gi\|41152...	231.0	[0..4]	[143..6]
NDK_CARHZ - Nucleoside diphosphate kinase OS=Carboxydothermus hydrogenoformans (strain ATCC BAA-161 / DSM 6008 /...	230.0	[0..3]	[143..1]

Back

Predicted Domain #1

Region A:
Residues: [1-143]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIERTFSII KPNAVAKNVI GNIFARFEAA GFKIVGTKML HLTVEQARGF YAEHDGKPFF  60
   61 DGLVEFMTSG PIVVSVLEGE NAVQRHRDLL GATNPANALA GTLRADYADS LTENGTHGSD 120
  121 SVESAAREIA YFFGEGEVCP RTR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	58.154902
Match:	2hurA
Description:	No description for 2hurA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits