YRC Public Data Repository - Protein Structure Prediction

Protein:	AMPN_ECOLI
Organism:	Escherichia coli
Length:	870 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AMPN_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|74311490, gi\|... - gi\|74311490\|ref\|YP_309909.1\| aminopeptidase N [Shigella sonnei Ss046], gi\|73854967\|gb\|AAZ87674.1\| am...	835.0	[0..1]	[870..1]
gi\|189361103, gi... - gi\|189361103\|gb\|EDU79522.1\| aminopeptidase N [Escherichia coli O157:H7 str. EC4486], gi\|168769930\|re... gi\|13360474, gi\|... - gi\|15830269\|ref\|NP_309042.1\| aminopeptidase N [Escherichia coli O157:H7 str. Sakai], gi\|13360474\|dbj... gi\|189366786, gi... - gi\|189366786\|gb\|EDU85202.1\| aminopeptidase N [Escherichia coli O157:H7 str. EC4501], gi\|168762928\|re... gi\|168757027, gi... - gi\|189355910\|gb\|EDU74329.1\| aminopeptidase N [Escherichia coli O157:H7 str. EC4401], gi\|168757027\|re... gi\|168751198, gi... - gi\|188014721\|gb\|EDU52843.1\| aminopeptidase N [Escherichia coli O157:H7 str. EC4113], gi\|168751198\|re... gi\|217321292, gi... - gi\|217325071\|ref\|ZP_03441155.1\| aminopeptidase N [Escherichia coli O157:H7 str. TW14588], gi\|2173212... gi\|13360474, gi\|... - gi\|15830269\|ref\|NP_309042.1\| aminopeptidase N [Escherichia coli O157:H7], gi\|13360474\|dbj\|BAB34438.1... gi\|189375325, gi... - gi\|189375325\|gb\|EDU93741.1\| aminopeptidase N [Escherichia coli O157:H7 str. EC508], gi\|168802782\|ref... gi\|168787364, gi... - gi\|189372768\|gb\|EDU91184.1\| aminopeptidase N [Escherichia coli O157:H7 str. EC869], gi\|168787364\|ref... gi\|188998776, gi... - gi\|188998776\|gb\|EDU67762.1\| aminopeptidase N [Escherichia coli O157:H7 str. EC4076], gi\|168783974\|re... gi\|209774682, gi... - pir\|\|G90755 aminopeptidase N [imported] - Escherichia coli (strain O157:H7, substrain RIMD 0509952),... gi\|187768342, gi... - gi\|187768342\|gb\|EDU32186.1\| aminopeptidase N [Escherichia coli O157:H7 str. EC4196], gi\|168776212\|re... gi\|209396683, gi... - gi\|209396683\|ref\|YP_002269604.1\| aminopeptidase N [Escherichia coli O157:H7 str. EC4115], gi\|2091580... gi\|208822021, gi... - gi\|208822021\|ref\|ZP_03262340.1\| aminopeptidase N [Escherichia coli O157:H7 str. EC4042], gi\|20873750... gi\|254792132, gi... - gi\|254792132\|ref\|YP_003076969.1\| aminopeptidase N [Escherichia coli O157:H7 str. TW14359], gi\|254591... gi\|208815284, gi... - gi\|208815284\|ref\|ZP_03256463.1\| aminopeptidase N [Escherichia coli O157:H7 str. EC4045], gi\|20873193... gi\|195939653 - gi\|195939653\|ref\|ZP_03085035.1\| aminopeptidase N [Escherichia coli O157:H7 str. EC4024]	834.0	[0..1]	[870..1]
gi\|110342720, gi... - gi\|110641128\|ref\|YP_668858.1\| aminopeptidase N [Escherichia coli 536], gi\|110342720\|gb\|ABG68957.1\| a... gi\|75241007, gi\|... - gi\|75241007\|ref\|ZP_00724896.1\| COG0308: Aminopeptidase N [Escherichia coli F11], gi\|191172092\|ref\|ZP...	833.0	[0..1]	[870..1]
gi\|194417372, gi... - gi\|83569158\|ref\|ZP_00920617.1\| COG0308: Aminopeptidase N [Shigella dysenteriae 1012], gi\|194434388\|r...	833.0	[0..1]	[870..1]
gi\|25289687 - pir\|\|E85619 aminopeptidase N [imported] - Escherichia coli (strain O157:H7, substrain EDL933) gi\|15800793, gi\|... - gi\|15800793\|ref\|NP_286807.1\| aminopeptidase N [Escherichia coli O157:H7 EDL933], gi\|12514107\|gb\|AAG5...	833.0	[0..1]	[870..1]
gi\|218351139, gi... - gi\|218694407\|ref\|YP_002402074.1\| aminopeptidase N [Escherichia coli 55989], gi\|218351139\|emb\|CAU9684... gi\|157155731, gi... - gi\|75189987\|ref\|ZP_00703254.1\| COG0308: Aminopeptidase N [Escherichia coli E24377A], gi\|157155731\|re...	833.0	[0..1]	[870..1]
gi\|117623150, gi... - gi\|117623150\|ref\|YP_852063.1\| aminopeptidase N [Escherichia coli APEC O1], gi\|115512274\|gb\|ABJ00349.... gi\|218557837, gi... - gi\|218557837\|ref\|YP_002390750.1\| aminopeptidase N [Escherichia coli S88], gi\|218364606\|emb\|CAR02292.... gi\|91071608, gi\|... - gi\|91210034\|ref\|YP_540020.1\| aminopeptidase N [Escherichia coli UTI89], gi\|91071608\|gb\|ABE06489.1\| a... gi\|237707079, gi... - gi\|237707079\|ref\|ZP_04537560.1\| aminopeptidase N [Escherichia sp. 3_2_53FAA], gi\|226898289\|gb\|EEH845...	833.0	[0..1]	[870..1]
gi\|227838854, gi... - gi\|227884102\|ref\|ZP_04001907.1\| aminopeptidase N [Escherichia coli 83972], gi\|227838854\|gb\|EEJ49320.... gi\|26246960, gi\|... - gi\|26246960\|ref\|NP_753000.1\| aminopeptidase N [Escherichia coli CFT073], gi\|26107360\|gb\|AAN79543.1\|A...	832.0	[0..1]	[870..1]
gi\|188489869, gi... - gi\|75512088\|ref\|ZP_00734673.1\| COG0308: Aminopeptidase N [Escherichia coli 53638], gi\|188494670\|ref\|... gi\|193064689, gi... - gi\|75257351\|ref\|ZP_00728867.1\| COG0308: Aminopeptidase N [Escherichia coli E22], gi\|193064689\|ref\|ZP... gi\|75229862, gi\|... - gi\|75229862\|ref\|ZP_00716385.1\| COG0308: Aminopeptidase N [Escherichia coli B7A], gi\|191166975\|ref\|ZP... gi\|209911443, gi... - gi\|209918184\|ref\|YP_002292268.1\| aminopeptidase N [Escherichia coli SE11], gi\|209911443\|dbj\|BAG76517... gi\|75214728, gi\|... - gi\|75214728\|ref\|ZP_00713233.1\| COG0308: Aminopeptidase N [Escherichia coli E110019], gi\|193071675\|re... gi\|218360287, gi... - gi\|218553519\|ref\|YP_002386432.1\| aminopeptidase N [Escherichia coli IAI1], gi\|218360287\|emb\|CAQ97837... gi\|75210377, gi\|... - gi\|75210377\|ref\|ZP_00710533.1\| COG0308: Aminopeptidase N [Escherichia coli B171], gi\|194428371\|ref\|Z...	832.0	[0..1]	[870..1]
gi\|187429689, gi... - gi\|75178255\|ref\|ZP_00698309.1\| COG0308: Aminopeptidase N [Shigella boydii BS512], gi\|187732697\|ref\|Y... gi\|81246085, gi\|... - gi\|82544674\|ref\|YP_408621.1\| aminopeptidase N [Shigella boydii Sb227], gi\|81246085\|gb\|ABB66793.1\| am...	832.0	[0..1]	[870..1]

Back

Predicted Domain #1

Region A:
Residues: [1-870]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTQQPQAKYR HDYRAPDYQI TDIDLTFDLD AQKTVVTAVS QAVRHGASDA PLRLNGEDLK  60
   61 LVSVHINDEP WTAWKEEEGA LVISNLPERF TLKIINEISP AANTALEGLY QSGDALCTQC 120
  121 EAEGFRHITY YLDRPDVLAR FTTKIIADKI KYPFLLSNGN RVAQGELENG RHWVQWQDPF 180
  181 PKPCYLFALV AGDFDVLRDT FTTRSGREVA LELYVDRGNL DRAPWAMTSL KNSMKWDEER 240
  241 FGLEYDLDIY MIVAVDFFNM GAMENKGLNI FNSKYVLART DTATDKDYLD IERVIGHEYF 300
  301 HNWTGNRVTC RDWFQLSLKE GLTVFRDQEF SSDLGSRAVN RINNVRTMRG LQFAEDASPM 360
  361 AHPIRPDMVI EMNNFYTLTV YEKGAEVIRM IHTLLGEENF QKGMQLYFER HDGSAATCDD 420
  421 FVQAMEDASN VDLSHFRRWY SQSGTPIVTV KDDYNPETEQ YTLTISQRTP ATPDQAEKQP 480
  481 LHIPFAIELY DNEGKVIPLQ KGGHPVNSVL NVTQAEQTFV FDNVYFQPVP ALLCEFSAPV 540
  541 KLEYKWSDQQ LTFLMRHARN DFSRWDAAQS LLATYIKLNV ARHQQGQPLS LPVHVADAFR 600
  601 AVLLDEKIDP ALAAEILTLP SVNEMAELFD IIDPIAIAEV REALTRTLAT ELADELLAIY 660
  661 NANYQSEYRV EHEDIAKRTL RNACLRFLAF GETHLADVLV SKQFHEANNM TDALAALSAA 720
  721 VAAQLPCRDA LMQEYDDKWH QNGLVMDKWF ILQATSPAAN VLETVRGLLQ HRSFTMSNPN 780
  781 RIRSLIGAFA GSNPAAFHAE DGSGYLFLVE MLTDLNSRNP QVASRLIEPL IRLKRYDAKR 840
  841 QEKMRAALEQ LKGLENLSGD LYEKITKALA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	2hpoA
Description:	No description for 2hpoA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits