YRC Public Data Repository - Protein Structure Prediction

Protein:	FER_ECOLI
Organism:	Escherichia coli
Length:	111 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FER_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|23345072 - gi\|23345072\|gb\|AAN17750.1\| putative electron carrier protein ferredoxin [Xenorhabdus nematophila]	134.0	[0..1]	[111..1]
gi\|77974682, gi\|... - gi\|77974682\|ref\|ZP_00830221.1\| COG0633: Ferredoxin [Yersinia frederiksenii ATCC 33641], gi\|238788182...	133.0	[0..1]	[111..1]
gi\|75515864, gi\|... - gi\|75515864\|ref\|ZP_00737999.1\| COG0633: Ferredoxin [Escherichia coli 53638], gi\|188495583\|ref\|ZP_030... gi\|82777908, gi\|... - gi\|82777908\|ref\|YP_404257.1\| [2FE-2S] ferredoxin, electron carrer protein [Shigella dysenteriae Sd19... gi\|157080869, gi... - gi\|75187277\|ref\|ZP_00700544.1\| COG0633: Ferredoxin [Escherichia coli E24377A], gi\|157158839\|ref\|YP_0...	132.0	[0..1]	[111..1]
gi\|122088368, gi... - gi\|123441407\|ref\|YP_001005394.1\| ferredoxin [Yersinia enterocolitica subsp. enterocolitica 8081], gi... gi\|238714937, gi... - gi\|77958550\|ref\|ZP_00822581.1\| COG0633: Ferredoxin [Yersinia bercovieri ATCC 43970], gi\|238784228\|re... gi\|238750353, gi... - gi\|238750353\|ref\|ZP_04611854.1\| Ferredoxin [Yersinia rohdei ATCC 43380], gi\|238711284\|gb\|EEQ03501.1\|...	131.0	[0..1]	[111..1]
gi\|36786592, gi\|... - gi\|37527158\|ref\|NP_930502.1\| ferredoxin, 2Fe-2S [Photorhabdus luminescens subsp. laumondii TTO1], gi...	131.0	[0..1]	[111..1]
gi\|77977364, gi\|... - gi\|77977364\|ref\|ZP_00832815.1\| COG0633: Ferredoxin [Yersinia intermedia ATCC 29909], gi\|238794842\|re...	131.0	[0..1]	[111..1]
gi\|199606290, gi... - gi\|200389192\|ref\|ZP_03215804.1\| ferredoxin, 2Fe-2S type, ISC system [Salmonella enterica subsp. ente... gi\|198245674, gi... - gi\|198245674\|ref\|YP_002216603.1\| ferredoxin, 2Fe-2S type, ISC system [Salmonella enterica subsp. ent... gi\|62128736, gi\|... - gi\|62181103\|ref\|YP_217520.1\| [2FE-2S] ferredoxin, electron carrer protein, believed to be involved i... gi\|197092995, gi... - gi\|197361519\|ref\|YP_002141155.1\| ferredoxin [Salmonella enterica subsp. enterica serovar Paratyphi A... gi\|56126841, gi\|... - gi\|56412584\|ref\|YP_149659.1\| ferredoxin [Salmonella enterica subsp. enterica serovar Paratyphi A str... gi\|197242309, gi... - gi\|197264054\|ref\|ZP_03164128.1\| ferredoxin, 2Fe-2S type, ISC system [Salmonella enterica subsp. ente... gi\|213028697 - gi\|213028697\|ref\|ZP_03343144.1\| ferredoxin [Salmonella enterica subsp. enterica serovar Typhi str. 4... gi\|206709749, gi... - gi\|207857946\|ref\|YP_002244597.1\| ferredoxin [Salmonella enterica subsp. enterica serovar Enteritidis... gi\|205273418, gi... - gi\|205353637\|ref\|YP_002227438.1\| ferredoxin [Salmonella enterica subsp. enterica serovar Gallinarum ... gi\|204929578, gi... - gi\|204929578\|ref\|ZP_03220652.1\| ferredoxin, 2Fe-2S type, ISC system [Salmonella enterica subsp. ente... gi\|194402197, gi... - gi\|194443534\|ref\|YP_002041799.1\| ferredoxin, 2Fe-2S type, ISC system [Salmonella enterica subsp. ent... gi\|168821482, gi... - gi\|205342025\|gb\|EDZ28789.1\| ferredoxin, 2Fe-2S type, ISC system [Salmonella enterica subsp. enterica... gi\|195630745, gi... - gi\|195630745\|gb\|EDX49337.1\| ferredoxin, 2Fe-2S type, ISC system [Salmonella enterica subsp. enterica... gi\|205349682, gi... - gi\|205349682\|gb\|EDZ36313.1\| ferredoxin, 2Fe-2S type, ISC system [Salmonella enterica subsp. enterica... gi\|197212644, gi... - gi\|197248941\|ref\|YP_002147493.1\| ferredoxin, 2Fe-2S type, ISC system [Salmonella enterica subsp. ent... gi\|194736732, gi... - gi\|194736732\|ref\|YP_002115600.1\| ferredoxin, 2Fe-2S type, ISC system [Salmonella enterica subsp. ent... gi\|194469665, gi... - gi\|194469665\|ref\|ZP_03075649.1\| ferredoxin, 2Fe-2S type, ISC system [Salmonella enterica subsp. ente... gi\|194450671, gi... - gi\|194450671\|ref\|YP_002046599.1\| ferredoxin, 2Fe-2S type, ISC system [Salmonella enterica subsp. ent... gi\|238912659 - gi\|238912659\|ref\|ZP_04656496.1\| ferredoxin [Salmonella enterica subsp. enterica serovar Tennessee st... gi\|213612940 - gi\|213612940\|ref\|ZP_03370766.1\| ferredoxin [Salmonella enterica subsp. enterica serovar Typhi str. E... gi\|213582309 - gi\|213582309\|ref\|ZP_03364135.1\| ferredoxin [Salmonella enterica subsp. enterica serovar Typhi str. E... gi\|213425316 - gi\|213425316\|ref\|ZP_03358066.1\| ferredoxin [Salmonella enterica subsp. enterica serovar Typhi str. E... gi\|213052347 - gi\|213052347\|ref\|ZP_03345225.1\| ferredoxin [Salmonella enterica subsp. enterica serovar Typhi str. E... gi\|224582922, gi... - gi\|224582922\|ref\|YP_002636720.1\| ferredoxin [Salmonella enterica subsp. enterica serovar Paratyphi C... gi\|214000610 - gi\|214000610\|ref\|ZP_03411345.1\| ferredoxin [Salmonella enterica subsp. enterica serovar Typhi str. E... gi\|213865074 - gi\|213865074\|ref\|ZP_03387193.1\| ferredoxin [Salmonella enterica subsp. enterica serovar Typhi str. M... gi\|213646430 - gi\|213646430\|ref\|ZP_03376483.1\| ferredoxin [Salmonella enterica subsp. enterica serovar Typhi str. J... lcl\|NC_016856.1_... - [gene=fdx] [protein=electron carrer protein] [protein_id=YP_005238640.1] [location=complement(272941... gi\|16503752, gi\|... - gi\|25282673\|pir\|\|AI0823 ferredoxin [imported] - Salmonella enterica subsp. enterica serovar Typhi (s... gi\|16761452 - gi\|16761452\|ref\|NP_457069.1\| ferredoxin [Salmonella enterica subsp. enterica serovar Typhi str. CT18... gi\|16421083, gi\|... - gi\|16765858\|ref\|NP_461473.1\| electron carrer protein [Salmonella typhimurium LT2], gi\|16421083\|gb\|AA... gi\|29136476, gi\|... - gi\|29140851\|ref\|NP_804193.1\| ferredoxin [Salmonella enterica subsp. enterica serovar Typhi str. Ty2]... gi\|205325389, gi... - gi\|205325389\|gb\|EDZ13228.1\| ferredoxin, 2Fe-2S type, ISC system [Salmonella enterica subsp. enterica... gi\|161612698, gi... - gi\|161612698\|ref\|YP_001586663.1\| hypothetical protein SPAB_00395 [Salmonella enterica subsp. enteric... gi\|205337598, gi... - gi\|205337598\|gb\|EDZ24362.1\| ferredoxin, 2Fe-2S type, ISC system [Salmonella enterica subsp. enterica... gi\|168238276, gi... - gi\|197288870\|gb\|EDY28243.1\| ferredoxin, 2Fe-2S type, ISC system [Salmonella enterica subsp. enterica... gi\|205333552, gi... - gi\|205333552\|gb\|EDZ20316.1\| ferredoxin, 2Fe-2S type, ISC system [Salmonella enterica subsp. enterica... gi\|167992663, gi... - gi\|205329151\|gb\|EDZ15915.1\| ferredoxin, 2Fe-2S type, ISC system [Salmonella enterica subsp. enterica...	131.0	[0..1]	[111..1]
gi\|238796776, gi... - gi\|77963414\|ref\|ZP_00827224.1\| COG0633: Ferredoxin [Yersinia mollaretii ATCC 43969], gi\|238796776\|re...	131.0	[0..1]	[111..1]
gi\|229899044, gi... - gi\|229899044\|ref\|ZP_04514188.1\| [2Fe-2S] ferredoxin [Yersinia pestis biovar Orientalis str. India 19... gi\|149365350, gi... - gi\|149365350\|ref\|ZP_01887385.1\| adrenodoxin family ferredoxin [Yersinia pestis CA88-4125], gi\|149291... gi\|145599508, gi... - gi\|145599508\|ref\|YP_001163584.1\| ferredoxin [Yersinia pestis Pestoides F], gi\|145211204\|gb\|ABP40611.... gi\|166206402, gi... - gi\|166212471\|ref\|ZP_02238506.1\| ferredoxin, 2Fe-2S type, ISC system [Yersinia pestis biovar Antiqua ... gi\|165992834, gi... - gi\|166008452\|ref\|ZP_02229350.1\| ferredoxin, 2Fe-2S type, ISC system [Yersinia pestis biovar Antiqua ... gi\|167421297, gi... - gi\|167421297\|ref\|ZP_02313050.1\| ferredoxin, 2Fe-2S type, ISC system [Yersinia pestis biovar Oriental... gi\|167398828, gi... - gi\|167398828\|ref\|ZP_02304352.1\| ferredoxin, 2Fe-2S type, ISC system [Yersinia pestis biovar Antiqua ... gi\|167468082 - gi\|167468082\|ref\|ZP_02332786.1\| ferredoxin, 2Fe-2S type, ISC system [Yersinia pestis FV-1] Q667Y6\|Q667Y6_YERPS - Adrenodoxin family ferredoxin - Yersinia pseudotuberculosis gi\|167423584, gi... - gi\|167423584\|ref\|ZP_02315337.1\| ferredoxin, 2Fe-2S type, ISC system [Yersinia pestis biovar Mediaeva... gi\|186699290, gi... - gi\|186896264\|ref\|YP_001873376.1\| ferredoxin, 2Fe-2S type, ISC system [Yersinia pseudotuberculosis PB... gi\|21958108, gi\|... - gi\|22125239\|ref\|NP_668662.1\| adrenodoxin family ferredoxin [Yersinia pestis KIM], gi\|21958108\|gb\|AAM... gi\|153949773, gi... - gi\|77629890\|ref\|ZP_00792476.1\| COG0633: Ferredoxin [Yersinia pseudotuberculosis IP 31758], gi\|153949... gi\|165937002, gi... - gi\|89102341\|ref\|ZP_01174982.1\| COG0633: Ferredoxin [Yersinia pestis biovar Orientalis str. IP275], g... gi\|25282672 - pir\|\|AC0352 adrenodoxin family ferredoxin [imported] - Yersinia pestis (strain CO92) gi\|108808326, gi... - gi\|108808326\|ref\|YP_652242.1\| ferredoxin [Yersinia pestis Antiqua], gi\|108780239\|gb\|ABG14297.1\| adre... gi\|51590452, gi\|... - gi\|51597170\|ref\|YP_071361.1\| ferredoxin [Yersinia pseudotuberculosis IP 32953], gi\|51590452\|emb\|CAH2... gi\|108811409, gi... - gi\|229901663\|ref\|ZP_04516785.1\| [2Fe-2S] ferredoxin [Yersinia pestis Nepal516], gi\|229681592\|gb\|EEO7... gi\|45437208, gi\|... - gi\|45442344\|ref\|NP_993883.1\| adrenodoxin family ferredoxin [Yersinia pestis biovar Microtus str. 910... gi\|115348561, gi... - gi\|218929950\|ref\|YP_002347825.1\| adrenodoxin family ferredoxin [Yersinia pestis CO92], gi\|16123082\|r... gi\|165928243, gi... - gi\|165928243\|ref\|ZP_02224075.1\| ferredoxin, 2Fe-2S type, ISC system [Yersinia pestis biovar Oriental... gi\|229694841, gi... - gi\|229838475\|ref\|ZP_04458634.1\| [2Fe-2S] ferredoxin [Yersinia pestis biovar Orientalis str. PEXU2], ... gi\|162352066, gi... - gi\|77633387\|ref\|ZP_00795520.1\| COG0633: Ferredoxin [Yersinia pestis Angola], gi\|162419251\|ref\|YP_001... gi\|229895480, gi... - gi\|229895480\|ref\|ZP_04510651.1\| [2Fe-2S] ferredoxin [Yersinia pestis Pestoides A], gi\|229701286\|gb\|E...	131.0	[0..1]	[111..1]
gi\|117624753, gi... - gi\|117624753\|ref\|YP_853666.1\| [2Fe-2S] ferredoxin [Escherichia coli APEC O1], gi\|115513877\|gb\|ABJ019... gi\|218706028, gi... - gi\|218706028\|ref\|YP_002413547.1\| [2Fe-2S] ferredoxin [Escherichia coli UMN026], gi\|218433125\|emb\|CAR... gi\|110344282, gi... - gi\|110642690\|ref\|YP_670420.1\| ferredoxin, 2Fe-2S [Escherichia coli 536], gi\|110344282\|gb\|ABG70519.1\|... gi\|91073426, gi\|... - gi\|91211852\|ref\|YP_541838.1\| ferredoxin, 2Fe-2S [Escherichia coli UTI89], gi\|91073426\|gb\|ABE08307.1\|... gi\|75240450, gi\|... - gi\|75240450\|ref\|ZP_00724384.1\| COG0633: Ferredoxin [Escherichia coli F11], gi\|191172633\|ref\|ZP_03034... gi\|218559451, gi... - gi\|218559451\|ref\|YP_002392364.1\| [2Fe-2S] ferredoxin [Escherichia coli S88], gi\|218366220\|emb\|CAR039... gi\|218690645, gi... - gi\|218690645\|ref\|YP_002398857.1\| [2Fe-2S] ferredoxin [Escherichia coli ED1a], gi\|218428209\|emb\|CAR09... gi\|237705035, gi... - gi\|237705035\|ref\|ZP_04535516.1\| ferredoxin [Escherichia sp. 3_2_53FAA], gi\|226901401\|gb\|EEH87660.1\| ... gi\|170123952, gi... - gi\|170767618\|ref\|ZP_02902071.1\| ferredoxin, 2Fe-2S type, ISC system [Escherichia albertii TW07627], ... gi\|218355579, gi... - gi\|218548038\|ref\|YP_002381829.1\| [2Fe-2S] ferredoxin [Escherichia fergusonii ATCC 35469], gi\|2183555...	130.0	[0..1]	[111..1]

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Predicted Domain #1

Region A:
Residues: [1-111]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPKIVILPHQ DLCPDGAVLE ANSGETILDA ALRNGIEIEH ACEKSCACTT CHCIVREGFD  60
   61 SLPESSEQED DMLDKAWGLE PESRLSCQAR VTDEDLVVEI PRYTINHARE H

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.39794
Match:	1i7hA
Description:	Adrenodoxin-like ferredoxin
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits