YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|79689
Organism:	Synechococcus sp.
Length:	107 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|79689.

Description	E-value	Query Range	Subject Range
gi\|76812139, gi\|... - gi\|76812139\|ref\|YP_333769.1\| thioredoxin 1 [Burkholderia pseudomallei 1710b], gi\|76581592\|gb\|ABA5106...	162.0	[0..1]	[107..39]
gi\|83721362, gi\|... - gi\|83721362\|ref\|YP_442739.1\| thioredoxin [Burkholderia thailandensis E264], gi\|83655187\|gb\|ABC39250....	161.0	[0..1]	[107..39]
gi\|25067747 - gi\|25067747\|gb\|AAN65341.1\| thioredoxin/transketolase fusion protein [synthetic construct]	159.0	[0..1]	[107..1]
gi\|82703204, gi\|... - gi\|82703204\|ref\|YP_412770.1\| thioredoxin [Nitrosospira multiformis ATCC 25196], gi\|82411269\|gb\|ABB75...	159.0	[0..1]	[107..1]
gi\|32029610, gi\|... - gi\|32029610\|ref\|ZP_00132604.1\| COG0526: Thiol-disulfide isomerase and thioredoxins [Haemophilus somn... gi\|113461487, gi... - gi\|53692484\|ref\|ZP_00122715.2\| COG0526: Thiol-disulfide isomerase and thioredoxins [Haemophilus somn...	158.0	[0..1]	[106..1]
gi\|575449 - gi\|575449\|gb\|AAA67270.1\| Derived from E. coli thioredoxin gene; normal translation termination codon...	158.0	[0..1]	[107..1]
gi\|33576644, gi\|... - gi\|33602206\|ref\|NP_889766.1\| thioredoxin 1 [Bordetella bronchiseptica RB50], gi\|33576644\|emb\|CAE3372...	156.0	[0..1]	[107..34]
gi\|33566268 - gi\|33566268\|emb\|CAE37179.1\| thioredoxin 1 [Bordetella parapertussis] gi\|33596499 - gi\|33596499\|ref\|NP_884142.1\| thioredoxin 1 [Bordetella parapertussis 12822] gi\|33592390, gi\|... - gi\|33592390\|ref\|NP_880034.1\| thioredoxin 1 [Bordetella pertussis Tohama I], gi\|33572035\|emb\|CAE41559...	156.0	[0..1]	[107..34]
gi\|95928472, gi\|... - gi\|95928472\|ref\|ZP_01311219.1\| thioredoxin [Desulfuromonas acetoxidans DSM 684], gi\|95135262\|gb\|EAT1...	156.0	[0..3]	[107..5]
gi\|110617077, gi... - gi\|110807529\|ref\|YP_691049.1\| thioredoxin [Shigella flexneri 5 str. 8401], gi\|110617077\|gb\|ABF05744.... gi\|68304124\|gb\|A... - TrxA [Escherichia coli] gi\|110644108, gi... - gi\|110644108\|ref\|YP_671838.1\| thioredoxin [Escherichia coli 536], gi\|110345700\|gb\|ABG71937.1\| thiore... gi\|68304124 - gi\|68304124\|gb\|AAY89720.1\| TrxA [Escherichia coli] tr\|A0A0G3HR77\|A0... - Thioredoxin 1 protein OS=Escherichia coli (strain K12) GN=trxA PE=4 SV=1 gi\|26250519, gi\|... - gi\|26250519\|ref\|NP_756559.1\| thioredoxin [Escherichia coli CFT073], gi\|26110949\|gb\|AAN83133.1\|AE0167... gi\|91213301, gi\|... - gi\|91213301\|ref\|YP_543287.1\| thioredoxin [Escherichia coli UTI89], gi\|91074875\|gb\|ABE09756.1\| thiore... gi\|24115074, gi\|... - ref\|NP_709584.1\| thioredoxin 1 [Shigella flexneri 2a str. 301], gb\|AAN45291.1\| thioredoxin 1 [Shige...	156.0	[0..1]	[107..36]

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Predicted Domain #1

Region A:
Residues: [1-107]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVAAAVTDA TFKQEVLESS IPVLVDFWAP WCGPCRMVAP VVDEIAQQYS DQVKVVKVNT  60
   61 DENPSVASQY GIRSIPTLMI FKDGQRVDTV VGAVPKTTLA NTLDKHL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	38.09691
Match:	2h71A
Description:	No description for 2h71A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits