YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|55250527
Organism:	Xenopus laevis
Length:	269 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|55250527.

Description	E-value	Query Range	Subject Range
gi\|76671951 - gi\|76671951\|ref\|XP_604404.2\| PREDICTED: similar to SURF-4 [Bos taurus]	363.0	[0..1]	[269..86]
gi\|33086478 - gi\|33086478\|gb\|AAP92551.1\| Ab1-205 [Rattus norvegicus]	363.0	[0..1]	[269..1]
gi\|74220396 - gi\|74220396\|dbj\|BAE31423.1\| unnamed protein product [Mus musculus]	345.0	[0..1]	[269..1]
ENSPTRT00000039854 - null gi\|123997081, gi... - gi\|123997081\|gb\|ABM86142.1\| surfeit 4 [synthetic construct], gi\|123982418\|gb\|ABM82950.1\| surfeit 4 [... SURF4 - surfeit 4 SURF4_PONPY - Surfeit locus protein 4 - Pongo pygmaeus (Orangutan) SURF4_PONAB - Surfeit locus protein 4 OS=Pongo abelii GN=SURF4 PE=2 SV=1	345.0	[0..1]	[269..1]
gi\|145013229, gi... - gi\|39959108\|ref\|XP_364464.1\| hypothetical protein MGG_09309 [Magnaporthe grisea 70-15], gb\|EAA55502....	344.0	[0..3]	[267..35]
gi\|85113270 - gi\|85113270\|ref\|XP_964496.1\| hypothetical protein NCU03319 [Neurospora crassa OR74A] gi\|32420623, gi\|... - gi\|32420623\|ref\|XP_330755.1\| hypothetical protein [Neurospora crassa], gi\|28926280\|gb\|EAA35260.1\| hy...	343.0	[0..7]	[267..39]
SURF4_CHICK - Surfeit locus protein 4 OS=Gallus gallus GN=SURF4 PE=2 SV=1	343.0	[0..1]	[269..1]
SURF4_DANRE - Surfeit locus protein 4 OS=Danio rerio GN=surf4 PE=2 SV=1	342.0	[0..1]	[269..1]
SURF4_TAKRU - Surfeit locus protein 4 OS=Takifugu rubripes GN=surf4 PE=3 SV=1	342.0	[0..1]	[269..1]
gi\|39849964, gi\|... - gi\|45361597\|ref\|NP_989373.1\| surfeit gene 4 [Xenopus (Silurana) tropicalis], gi\|39849964\|gb\|AAH64189...	340.0	[0..1]	[269..1]

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Predicted Domain #1

Region A:
Residues: [1-152]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGQNDLMGTA EDFADQFLRV TKQYLPHVAR LCLISTFLED GIRMWFQWSE QRDYIDTTWS  60
   61 CGYLLASSFV FLNLLGQLTG CVLVLSRNFV QYACFGLFGI IALQTIAYSI LWDLKFLMRN 120
  121 LALGGGLLLL LAESRSEGKS MFAGVPTMRE SS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [153-269]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PKQYMQLGGR VLLVLMFMTL LHFDASFFSI IQNIVGTALM ILVAIGFKTK LAALTLVVWL  60
   61 FAINVYFNAF WTIPVYKPMH DFLKYDFFQT MSVIGGLLLV VALGPGGVSM DEKKKEW

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits