YRC Public Data Repository - Protein Structure Prediction

Protein:	PGAM1_RAT
Organism:	Rattus norvegicus
Length:	254 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PGAM1_RAT.

Description	E-value	Query Range	Subject Range
gi\|47223880 - gi\|47223880\|emb\|CAG06057.1\| unnamed protein product [Tetraodon nigroviridis]	294.0	[0..1]	[254..1]
gi\|44890340, gi\|... - gi\|44890340\|gb\|AAH66680.1\| Phosphoglycerate mutase 1a [Danio rerio], gi\|38488700\|ref\|NP_942099.1\| bi...	291.0	[0..1]	[254..1]
gi\|50603688, gi\|... - gi\|50603688\|gb\|AAH77484.1\| MGC82549 protein [Xenopus laevis], gi\|148233078\|ref\|NP_001086809.1\| MGC82...	291.0	[0..1]	[254..1]
PGAM1_CHICK - Phosphoglycerate mutase 1 OS=Gallus gallus GN=PGAM1 PE=1 SV=3	290.0	[0..1]	[254..1]
gi\|91092672 - gi\|91092672\|ref\|XP_971117.1\| PREDICTED: similar to putative phosphoglycerate mutase [Tribolium casta...	285.0	[0..1]	[253..1]

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Predicted Domain #1

Region A:
Residues: [1-254]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAYKLVLIR HGESAWNLEN RFSGWYDADL SPAGHEEAKR GGQALRDAGY EFDICFTSVQ  60
   61 KRAIRTLWTV LDAIDQMWLP VVRTWRLNER HYGGLTGLNK AETAAKHGEA QVKIWRRSYD 120
  121 VPPPPMEPDH PFYSNISKDR RYADLTEDQL PSCESLKDTI ARALPFWNEE IVPQIKEGKR 180
  181 VLIAAHGNSL RGIVKHLEGL SEEAIMELNL PTGIPIVYEL DKNLKPIKPM QFLGDEETVR 240
  241 KAMEAVAAQG KVKK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	75.522879
Match:	1yfkA
Description:	Crystal structure of human B type phosphoglycerate mutase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits