YRC Public Data Repository - Protein Structure Prediction

Protein:	SNP25_PANTR
Organism:	Pan troglodytes
Length:	206 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SNP25_PANTR.

Description	E-value	Query Range	Subject Range
gi\|481203 - gi\|481203\|pir\|\|S38309 SNAP-25 protein - chicken	3.0E-50	[1..184]	[1..184]
gi\|50841439 - gi\|50841439\|gb\|AAT84082.1\| synaptosomal-associated protein [Carassius auratus]	3.0E-44	[38..206]	[1..166]
gi\|27448107, gi\|... - gi\|27448107\|gb\|AAO13788.1\|AF335586_1 SNAP25a [Xenopus laevis], gi\|148232204\|ref\|NP_001083880.1\| SNAP...	9.0E-44	[1..206]	[1..206]
gi\|134026022, gi... - gi\|89272046\|emb\|CAJ83202.1\| synaptosomal-associated protein, 25kDa [Xenopus tropicalis], gi\|62858133...	3.0E-43	[1..206]	[1..206]
gi\|55731614 - gi\|55731614\|emb\|CAH92513.1\| hypothetical protein [Pongo abelii] gi\|55731614\|emb\|... - hypothetical protein [Pongo pygmaeus]	4.0E-43	[1..206]	[1..206]
gi\|62898966 - gi\|62898966\|dbj\|BAD97337.1\| synaptosomal-associated protein 25 isoform SNAP25B variant [Homo sapiens...	5.0E-43	[1..206]	[1..206]

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Predicted Domain #1

Region A:
Residues: [1-103]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEDADMRNE LEEMQRRADQ LADESLESTR RMLQLVEESK DAGIRTLVML DEQGEQLERI  60
   61 EEGMDQINKD MKEAEKNLTD LGKFCGLCVC PCNKLKSSDA YKK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	8.39794
Match:	1l4aC
Description:	Synaptosomal-assosiated protein SNAP-25
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [104-206]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AWGNNQDGVV ASQPARVVDE REQMAISGGF IRRVTNDARE NEMDENLEQV SGIIGNLRHM  60
   61 ALDMGNEIDT QNRQIDRIME KADSNKTRID EANQRATKML GSG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	14.30103
Match:	1sfcD
Description:	Synaptosomal-assosiated protein SNAP-25
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits