YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|110743259, gi...
Organism: Arabidopsis thaliana
Length: 263 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|110743259, gi....

Description E-value Query
Range
Subject
Range
gi|106895728, gi... - gi|158319524|ref|YP_001512031.1| RNA methyltransferase [Alkaliphilus oremlandii OhILAs], gi|15813972...
209.0 [0..3] [237..14]

Back

Predicted Domain #1
Region A:
Residues: [1-263]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESCCRSVIA SRTFHLRSSG RLFPSLSLTH LKGKLSLSIN SFSSKIQSHA LRGVGIGESD  60
   61 KKNPLPRGAG EGVKEDARSK LLHVVLVSPQ IPGNTGCIAR TCAASAVGLH LVGPLGFQVD 120
  121 DARVKRAGLD YWPFVVVKAH SSWAEFQEYF RLQEGEKRMI AFTKRGTRIH SDFSYRSGDY 180
  181 LLFGSETSGL PPEALSDCNH EPYGGGTLRI PMVETYVRCL NLSVSVGIAL YEASRQLNYE 240
  241 QIECAPQGCV NGEEPLLTED IFA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 36.221849
Match: 1j85A
Description: Hypothetical tRNA/rRNA methyltransfease HI0766 (YibK homologue)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
RNA methyltransferase activity 4.77771076540343 bayes_pls_golite062009
methyltransferase activity 4.0901595540349 bayes_pls_golite062009
transferase activity, transferring one-carbon groups 4.01958090893547 bayes_pls_golite062009
rRNA methyltransferase activity 3.659149846946 bayes_pls_golite062009
S-adenosylmethionine-dependent methyltransferase activity 2.59156540645412 bayes_pls_golite062009
tRNA methyltransferase activity 2.52700462137917 bayes_pls_golite062009
tRNA (guanine) methyltransferase activity 2.29844424181442 bayes_pls_golite062009
tRNA (guanine-N1-)-methyltransferase activity 2.0947794364355 bayes_pls_golite062009
transferase activity 1.84002196534744 bayes_pls_golite062009
catalytic activity 1.16774040077235 bayes_pls_golite062009
rRNA (guanine) methyltransferase activity 0.47764353619615 bayes_pls_golite062009
N-methyltransferase activity 0.0655574594365502 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle